View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7795_low_7 (Length: 254)

Name: NF7795_low_7
Description: NF7795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7795_low_7
NF7795_low_7
[»] chr5 (8 HSPs)
chr5 (19-243)||(11049765-11049989)
chr5 (27-254)||(10609810-10610037)
chr5 (23-204)||(10563123-10563304)
chr5 (31-211)||(10742627-10742807)
chr5 (27-141)||(10749010-10749124)
chr5 (27-146)||(10765105-10765224)
chr5 (32-204)||(10718830-10719002)
chr5 (28-121)||(10548894-10548987)
[»] chr6 (5 HSPs)
chr6 (23-212)||(12930372-12930561)
chr6 (23-212)||(12897661-12897850)
chr6 (23-212)||(12905282-12905471)
chr6 (23-212)||(12956174-12956363)
chr6 (34-212)||(12946748-12946926)
[»] chr2 (1 HSPs)
chr2 (23-212)||(17925330-17925519)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 11049989 - 11049765
Alignment:
Q  19 tctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaa 118  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||| || ||||||| |||||    
T  11049989 tctcttgcaggagaaattcctacaaacctcacacattgctccaatcttaaagacttgtatttgggagggaacaatttaattggcaagataccaaatgaaa 11049890  T
Q  119 ttgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaaccgattt 218  Q
    ||| ||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11049889 ttggctctttgaaaaaacttcaatcattggccatttggaaaaataaattaactggaggaatcccttcattcatagggaatctttcaagcttaaccgattt 11049790  T
Q  219 ttcatttgcttataacaacttagaa 243  Q
    ||||||||  |||||||||||||||    
T  11049789 ttcatttgtgtataacaacttagaa 11049765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 10609810 - 10610037
Alignment:
Q  27 aggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcg 126  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| ||   ||||||||| |||||||| | ||| |||||||| |||||||||| |||     
T  10609810 aggagaaattcctacaaacctgacacattgctccaatctcaaagagttacgtttgggaggaaacaatttgattggcaaaataccgattgaaattggctct 10609909  T
Q  127 ttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttg 226  Q
    |||||||| |||||||   || ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||   ||||||| ||     
T  10609910 ttgaaaaagcttcaatatgtgaccatttggaaaaacaaattaaccggaggaattccttcattcgtagggaatctttcatgcttaacgcgtttttcagtta 10610009  T
Q  227 cttataacaacttagaaagagatattcc 254  Q
    |||  |||||||||||| | ||||||||    
T  10610010 cttcaaacaacttagaaggggatattcc 10610037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 10563123 - 10563304
Alignment:
Q  23 ttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgc 122  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| ||| |||  ||||||||||||||| || | ||| |||||||||||||||||||     
T  10563123 ttgtaggagaaattcctacaaacttgacatattgctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattgg 10563222  T
Q  123 ctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttca 204  Q
    ||| |||||||| ||||| ||||| | | |||     || || ||||| ||||| |||||||||| ||||||||| ||||||    
T  10563223 ctctttgaaaaagcttcattcattccacctttttggtaacaatttaactggagggatcccttcatccatagggaacctttca 10563304  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 10742807 - 10742627
Alignment:
Q  31 gaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttga 130  Q
    ||||||||||||||| | ||||||||||| ||||| ||||   |   ||||| ||||||||| || | ||| ||||||||||||||||||| ||  ||||    
T  10742807 gaaattcctacaaacttgacatattgctcaaatctgaaagtcataactttggcagggaacaagttgattggcaaaataccaattgaaattggctatttga 10742708  T
Q  131 aaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaa 211  Q
    |||||||||||||||||    ||||||| || || ||||| ||||||||| |||||| |||||||||||||||||| ||||    
T  10742707 aaaaacttcaatcattgagtgtttggaataacaatttaactggaggaatctcttcatccatagggaatctttcaagtttaa 10742627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 10749124 - 10749010
Alignment:
Q  27 aggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcg 126  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||  ||  || |||||||||||||| | | ||| ||||||||||||||||||| |||     
T  10749124 aggagaaattccttcaaacttgacatattgctccaatctcaaaggcttaaatgtgggagggaacaatgtgattggcaaaataccaattgaaattggctct 10749025  T
Q  127 ttgaaaaaacttcaa 141  Q
    |||||||| ||||||    
T  10749024 ttgaaaaagcttcaa 10749010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 10765224 - 10765105
Alignment:
Q  27 aggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcg 126  Q
    |||||||||||||| |||| | || |||||||||||||||| ||| |||  ||||||||||||||| || |  || ||||||| ||||||||||| |||     
T  10765224 aggagaaattcctataaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctct 10765125  T
Q  127 ttgaaaaaacttcaatcatt 146  Q
    |||||||| ||||| |||||    
T  10765124 ttgaaaaaccttcattcatt 10765105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 204
Target Start/End: Complemental strand, 10719002 - 10718830
Alignment:
Q  32 aaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaa 131  Q
    |||||||||||||||| || |||||||||||||||||||| || |  |||  |||||| ||  | | ||| ||| ||||| | ||| ||| ||| |||||    
T  10719002 aaattcctacaaacctgacgtattgctccaatctcaaagagttatccttgcaagggaataagctcattggcaaattaccagtagaagttggctctttgaa 10718903  T
Q  132 aaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttca 204  Q
    ||  ||||||    || ||||| | ||||| || ||||| |||||||||||||||||||| || |||||||||    
T  10718902 aaggcttcaaattctggccattggaaaaaacaatttaactggaggaatcccttcattcatgggaaatctttca 10718830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 10548894 - 10548987
Alignment:
Q  28 ggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattg 121  Q
    |||||||||||||||||| | ||| |||| | ||| || ||| | || |  ||| ||||||||||||| | |||||||||||||||||||||||    
T  10548894 ggagaaattcctacaaacttgacaaattgtttcaaccttaaatacttatccttgagagggaacaatttgattggaaaaataccaattgaaattg 10548987  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 12930372 - 12930561
Alignment:
Q  23 ttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgc 122  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||   |||||||||   |||||| || | ||||| |||||||||||||||||||     
T  12930372 ttgtaggtgagattcctacaaacctgacatattgctccaatctcaaattattgtatttgaatgggaaccatctcaatggtaaaataccaattgaaattgg 12930471  T
Q  123 ctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaac 212  Q
    ||| |||||||| |||||| || |  |  || |||| ||  | ||||||| ||||||||||||||| ||||| ||||||||| |||||||    
T  12930472 ctctttgaaaaagcttcaagcaatatctgttgggaataaccatttaaccgaaggaatcccttcatttataggaaatctttcatgcttaac 12930561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 12897661 - 12897850
Alignment:
Q  23 ttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgc 122  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||    |||||||||   |||||| || | | ||| |||||||||| |||| | |     
T  12897661 ttgtaggtgagattcctacaaacctgacatattgctccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaattcgg 12897760  T
Q  123 ctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaac 212  Q
    ||| |||||||| ||||||||| ||    || |||| || || |||||||||||||||||||||||||| || |||||||||||||||||    
T  12897761 ctctttgaaaaagcttcaatcaatgtttgttcggaataacaatttaaccggaggaatcccttcattcattggaaatctttcaagcttaac 12897850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 12905282 - 12905471
Alignment:
Q  23 ttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgc 122  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||    |||||||||   |||||| || | | ||| |||||||||| |||||| |     
T  12905282 ttgtaggtgagattcctacaaacctgacatattgctccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaaatcgg 12905381  T
Q  123 ctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaac 212  Q
    ||| |||||||| |||||| || ||    |||||| ||| || |||||||| |||||||||||||||||||| ||| |||||||||||||    
T  12905382 ctctttgaaaaagcttcaaacaatgagtgtttggagaaacaagttaaccggtggaatcccttcattcataggaaatatttcaagcttaac 12905471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 12956174 - 12956363
Alignment:
Q  23 ttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgc 122  Q
    ||||||| || ||||| |||||| | |||||||||||||||||||||   |||| ||||   |||||| || | ||||| |||||||||| |||||| |     
T  12956174 ttgtaggtgagattccaacaaacttgacatattgctccaatctcaaattattgtttttgaatgggaaccatctcaatggtaaaataccaactgaaatcgg 12956273  T
Q  123 ctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaac 212  Q
    ||| |||||||| ||||||  | || |  |||||| ||| || ||||| || |||||||||||||||||||| |||||||||||||||||    
T  12956274 ctctttgaaaaagcttcaaagaatgactgtttggagaaacaagttaactggtggaatcccttcattcataggaaatctttcaagcttaac 12956363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 12946748 - 12946926
Alignment:
Q  34 attcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaa 133  Q
    |||||||||||||| |||||||| ||||| ||||||  ||||| |||| | |||||| || | |  || |||||||||| |||||| | ||| ||||| |    
T  12946748 attcctacaaacctgacatattgttccaaactcaaatttttgtttttgagtgggaaccatctcatcggtaaaataccaactgaaatcggctctttgaaga 12946847  T
Q  134 aacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaac 212  Q
    |  ||||| || || |  ||  |||||| || |||| ||||||||||||||||||||| || |||||||||||||||||    
T  12946848 aggttcaagcaatgactgttgcgaaaaacaatttaatcggaggaatcccttcattcattggaaatctttcaagcttaac 12946926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 17925519 - 17925330
Alignment:
Q  23 ttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgc 122  Q
    ||||||| || |||||||||||||| |||||||| || |||||||||   |||| |||| | |||||| || | | ||| |||||||||| |||||| |     
T  17925519 ttgtaggtgagattcctacaaacctgacatattgttctaatctcaaattattgtttttgagtgggaaccatctcattggtaaaataccaactgaaatcgg 17925420  T
Q  123 ctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaac 212  Q
    ||| ||||||||||||||| |  || |  ||  | | || || ||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  17925419 ctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaatcccttcattcataggaaatctttcatgcttaac 17925330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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