View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7795_low_9 (Length: 227)
Name: NF7795_low_9
Description: NF7795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7795_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 49381942 - 49382142
Alignment:
| Q |
9 |
agtgagaagaagaacagaagcattcacacatcaaacaagtaagttcatgcatggatcaaccatgagtttgacaaagttacaacgtgtcaccgtaatttag |
108 |
Q |
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| T |
49381942 |
agtgaaaagaagaacagaagcattcacacatcaaacaagtaagttcatgcatggatcaaccatgagtttgacaaagttacaacgtgtcaccgtaatttag |
49382041 |
T |
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| Q |
109 |
acaaaagttacactttctagcttcaacaaaatcacagtgctacttgactttgtaaaatttatcgtgattacaaattaacatgcactaaactagctgctaa |
208 |
Q |
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| T |
49382042 |
acaaaagttacactttctagcttcaacaaaatcacagtgctacttgactttgtaaaatttatcgtgattacaaattaacatgcactaaactagctgctaa |
49382141 |
T |
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| Q |
209 |
t |
209 |
Q |
| |
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| T |
49382142 |
t |
49382142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 28453190 - 28453238
Alignment:
| Q |
101 |
taatttagacaaaagttacactttctagcttcaacaaaatcacagtgct |
149 |
Q |
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| T |
28453190 |
taattttgacaaaagttacactttagagcttaaacaaaatcacagtgct |
28453238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 7873133 - 7873091
Alignment:
| Q |
100 |
gtaatttagacaaaagttacactttctagcttcaacaaaatca |
142 |
Q |
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| T |
7873133 |
gtaattttgacaaaagttacattttatagcttcaacaaaatca |
7873091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 46090113 - 46090029
Alignment:
| Q |
99 |
cgtaatttagacaaaagttacactttctagcttcaacaaaatcacagtgctact-tgactttgtaaaatttatcgtgattacaaa |
182 |
Q |
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| T |
46090113 |
cgtacttttgacaaaagctacacctcatagcttcaacaaaatcacggtgctactatgattttgttaaatttaccgtgattccaaa |
46090029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 8472554 - 8472592
Alignment:
| Q |
110 |
caaaagttacactttctagcttcaacaaaatcacagtgc |
148 |
Q |
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| T |
8472554 |
caaaagctacactttgtagcttcaacaaaatcacagtgc |
8472592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 19413371 - 19413416
Alignment:
| Q |
103 |
atttagacaaaagttacactttctagcttcaacaaaatcacagtgc |
148 |
Q |
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| T |
19413371 |
attttgacaaaagttacactttggagcttcaacaaaatgacagtgc |
19413416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 30007536 - 30007497
Alignment:
| Q |
103 |
atttagacaaaagttacactttctagcttcaacaaaatca |
142 |
Q |
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| T |
30007536 |
attttgacaaaagttacactttcgagcttcaacaaaatca |
30007497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 20526505 - 20526548
Alignment:
| Q |
102 |
aatttagacaaaagttacactttctagcttcaacaaaatcacag |
145 |
Q |
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| T |
20526505 |
aattcagacaaaagttacactttcgagcttcaacgaaatcacag |
20526548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 23955531 - 23955571
Alignment:
| Q |
108 |
gacaaaagttacactttctagcttcaacaaaatcacagtgc |
148 |
Q |
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| T |
23955531 |
gacaaaagttacattttaaagcttcaacaaaatcacagtgc |
23955571 |
T |
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