View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7796_high_1 (Length: 674)
Name: NF7796_high_1
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 12 - 657
Target Start/End: Complemental strand, 39610741 - 39610096
Alignment:
| Q |
12 |
gagatgaaataaacataaaggcttatgaattgaaattgtaaccaaaaccaaaagtgaaagaaaattagatagaggcaaattagtacctcttttttagttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39610741 |
gagatgaaataaacataaaggcttatgaattgaaattgtaaccaaaaccaaaagtgaaagaaaattagatagaggcaaattagtacctcttttttagttt |
39610642 |
T |
|
| Q |
112 |
caattggagaagcagttgaattacaacctgcattgttttgaaccttattctccgttcttactcctggcattggattcgaaaggcaaaagtgaggaaatag |
211 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39610641 |
caattggagaagcagtagaattacagcctgcattgttttgaaccttattctccgttcttactcctggcattggattcgaaaggcaaaagtgaggaaatag |
39610542 |
T |
|
| Q |
212 |
tccacaagctgtagtattagttggaaagttttgtgaaccaacactttctaatatgcctccttccttatgccgcaacgattttggtctatgctgattaaga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39610541 |
tccacaagctgtagtattagttggaaagttttgtgaaccatcactttctaatatgcctccttccttatgccgcaacgattttggtctatgctgattaaga |
39610442 |
T |
|
| Q |
312 |
ggagatgacttttcagcacttccaattttccaaggctgtttttgttgtccttgtccgataagtaccggcttcttggaagcacgttgagaattttcagata |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39610441 |
ggagatgacttttcagcacttccaattttccaaggctgttttttttgtccttgtccgataagtaccggcttcttggaagcacgttgagaattttcagata |
39610342 |
T |
|
| Q |
412 |
taattgcctttgcagcaggcaaaaaccgatcaatcatgaaatcgcgagccttttcatcgcttgagaaacttccataggggttgacttgtgcctcatgatc |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39610341 |
taattgcctttgcagcaggcaaaaaccgatcaatcatgaaatcgcgagccttttcatcgcctgagaaacttccataggggttgacttgtgcctcatgatc |
39610242 |
T |
|
| Q |
512 |
atcatatacactcatactgcagcgtgtgacgaatgattcagtcctcgaaagtgtgtcacgagcatcttgaaaactctcatctccgtcatccgaatcagaa |
611 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
39610241 |
atcatatacactcatactgcagcgtgtgacgaatgattcagtcctcgaaagtgtgtcacaagcatcttgaaaactctcatctccgtcatctgaatcagaa |
39610142 |
T |
|
| Q |
612 |
tcagaatttaccttctccttgattccatcttcttcactctcatgtt |
657 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39610141 |
tcagaatttaccttctcctcgattccatcttcttcactctcatgtt |
39610096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 31007687 - 31007735
Alignment:
| Q |
414 |
attgcctttgcagcaggcaaaaaccgatcaatcatgaaatcgcgagcct |
462 |
Q |
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||||||||||| |||||||| |||| ||| ||||||||||| ||||||| |
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| T |
31007687 |
attgcctttgctgcaggcaagaacctatcgatcatgaaatcacgagcct |
31007735 |
T |
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