View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7796_high_2 (Length: 548)

Name: NF7796_high_2
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7796_high_2
NF7796_high_2
[»] chr8 (10 HSPs)
chr8 (13-537)||(10944457-10944981)
chr8 (485-537)||(41841210-41841262)
chr8 (485-537)||(44878980-44879032)
chr8 (485-537)||(44880889-44880941)
chr8 (488-537)||(40054312-40054361)
chr8 (490-537)||(37679757-37679804)
chr8 (488-537)||(37682057-37682106)
chr8 (485-531)||(42872514-42872560)
chr8 (485-531)||(42220909-42220955)
chr8 (505-537)||(44582870-44582902)
[»] chr1 (22 HSPs)
chr1 (200-537)||(14667169-14667510)
chr1 (224-537)||(14674207-14674530)
chr1 (224-537)||(14679585-14679908)
chr1 (413-537)||(14708502-14708627)
chr1 (413-537)||(14669767-14669892)
chr1 (53-137)||(14686562-14686646)
chr1 (83-150)||(14667599-14667666)
chr1 (224-537)||(14681331-14681648)
chr1 (413-537)||(14706012-14706137)
chr1 (413-537)||(14716215-14716340)
chr1 (413-537)||(14654398-14654523)
chr1 (413-537)||(14664189-14664314)
chr1 (413-537)||(14676556-14676681)
chr1 (413-537)||(14683674-14683799)
chr1 (485-537)||(28366257-28366309)
chr1 (485-537)||(33988067-33988119)
chr1 (485-537)||(38175588-38175640)
chr1 (413-537)||(14652449-14652574)
chr1 (413-537)||(14662240-14662365)
chr1 (491-537)||(11872539-11872585)
chr1 (494-537)||(37422175-37422218)
chr1 (311-373)||(14708407-14708473)
[»] chr2 (20 HSPs)
chr2 (200-537)||(30733696-30734037)
chr2 (306-537)||(30731832-30732057)
chr2 (80-150)||(30733537-30733607)
chr2 (485-537)||(9032050-9032102)
chr2 (485-537)||(8973309-8973361)
chr2 (485-537)||(8979319-8979371)
chr2 (485-537)||(9008018-9008070)
chr2 (485-537)||(9023444-9023496)
chr2 (485-537)||(9026783-9026835)
chr2 (485-537)||(32918077-32918129)
chr2 (485-537)||(43850046-43850098)
chr2 (487-537)||(2841075-2841125)
chr2 (485-537)||(8984690-8984742)
chr2 (488-537)||(9020847-9020896)
chr2 (490-537)||(19232457-19232504)
chr2 (485-537)||(9030395-9030447)
chr2 (484-537)||(8992144-8992197)
chr2 (484-537)||(9016489-9016542)
chr2 (413-467)||(32918006-32918059)
chr2 (485-537)||(8988452-8988504)
[»] chr5 (4 HSPs)
chr5 (484-537)||(1716510-1716563)
chr5 (488-537)||(3643640-3643689)
chr5 (488-537)||(7524968-7525017)
chr5 (492-537)||(4103249-4103294)
[»] chr4 (8 HSPs)
chr4 (484-537)||(11652450-11652503)
chr4 (485-537)||(49106587-49106639)
chr4 (485-537)||(49108691-49108743)
chr4 (485-537)||(50077257-50077309)
chr4 (488-537)||(3461200-3461249)
chr4 (489-537)||(26984725-26984773)
chr4 (489-537)||(26998798-26998846)
chr4 (489-537)||(48205832-48205880)
[»] chr6 (4 HSPs)
chr6 (485-537)||(10791710-10791762)
chr6 (485-537)||(10795948-10796000)
chr6 (488-537)||(30521242-30521291)
chr6 (490-537)||(8875691-8875738)
[»] chr3 (1 HSPs)
chr3 (490-536)||(15758562-15758608)


Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 13 - 537
Target Start/End: Complemental strand, 10944981 - 10944457
Alignment:
Q  13 catcaaaactttcactttatgttctagttttgtatgcttcttgaatgggtaaaagacatcaattggttttcaaatatgtcataccgatcaaatggtgcct 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10944981 catcgaaactttcactttatgttctagttttgtatgcttcttgaatgggtaaaagacatcaattggttttcaaatatgtcataccgatcaaatggtgcct 10944882  T
Q  113 atactgatctatgatgttcatattggatgatctatgatgtgaagtggatggtgggattgaacctctcgaattagtctatcatcgggccggacaccgagtt 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10944881 atactgatctatgatgttcatattggatgacctatgatgtgaagtggatggtgggattgaacctctcgaattagtctatcatcgggccggacaccgagtt 10944782  T
Q  213 ttgagaaaaggtttgcttcaagttttgtgcattgttttgcaggatttattctgcatattattgtttaaatcagcaatactctaatctgcatattaatgga 312  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10944781 ttgagaaaaggtttgcttcaagttttgtgcattgtttttcaggatttattctgcatattattgtttaaatcagcaatactataatctgcatattaatgga 10944682  T
Q  313 tgaattgttgaaatgatttagtgtgctctatgttgccatatagcttggtaattgctctttggtggcctttgcaacatatatacgtacaatgataaaaata 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10944681 tgaattgttgaaatgatttagtgtgctctatgttgccatatagcttggtaattgctctttggtggcctttgcaacatatatacatacaatgataaaaata 10944582  T
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaataggagctcatgttgtaactcatacctttctcggccttttggtt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  10944581 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaataggagctcatgttgtaactcatacctttctcgaccttttggct 10944482  T
Q  513 aagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||    
T  10944481 aagatcaagtgtagtatctgttctt 10944457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 41841262 - 41841210
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41841262 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 41841210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 44878980 - 44879032
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44878980 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 44879032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 44880941 - 44880889
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44880941 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 44880889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 40054312 - 40054361
Alignment:
Q  488 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 40054361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 490 - 537
Target Start/End: Original strand, 37679757 - 37679804
Alignment:
Q  490 atacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttctt 37679804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 37682057 - 37682106
Alignment:
Q  488 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttctt 37682106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 485 - 531
Target Start/End: Complemental strand, 42872560 - 42872514
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatct 531  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||    
T  42872560 aactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 531
Target Start/End: Complemental strand, 42220955 - 42220909
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatct 531  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||||||    
T  42220955 aactcatacatttttcggtcttttggctaagatcaagtgtagtatct 42220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 537
Target Start/End: Original strand, 44582870 - 44582902
Alignment:
Q  505 ttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||| ||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttctt 44582902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 200 - 537
Target Start/End: Complemental strand, 14667510 - 14667169
Alignment:
Q  200 cggacaccgagttttgagaaaaggtttgcttcaagttttgtgcattgttttgcaggatttattctgcatattattgtttaaatcagcaatactctaatct 299  Q
    ||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||  |||||   ||||||    
T  14667510 cggacaccgagttttaaaaaaatgtttgcttcaagttttgtgcactgttttgcaggatttaatctgcatattattgttcaaatcgacaatatcttaatct 14667411  T
Q  300 gcatattaatgg--------atgaattgttgaaatgatttagtgtgctctatgttgccatatagcttggtaattgctctttggtggcctttgcaacatat 391  Q
    ||||||||||||        |||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||    
T  14667410 gcatattaatggtctaatggatgaattgctgaaaggatttagtgtgctctatgttggcatatagcttggtagttgctctttggtgggctttgtaacatat 14667311  T
Q  392 atacgtacaatgataaaaataagtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaataggagctcatgttgtaactcat 491  Q
      |  | |||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||    
T  14667310 gca--ttcaatgataaaaat--gtcccacatcgaggagtcaagaaaacaactgagaacatgtcagatataaaagcagcaggatctcatgttgtaactcat 14667215  T
Q  492 acctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  14667214 acctttctcggccttttggctaagatcaagtgtagtatctgttctt 14667169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 224 - 537
Target Start/End: Original strand, 14674207 - 14674530
Alignment:
Q  224 tttgcttcaagttttgtgcattgttttgcaggatttattctgcatattattgtttaaatcagcaatactctaatctgcatattaat--------ggatga 315  Q
    ||||||| ||||||| |||| ||||||| |||||||| ||  |||||||||||||||||| |||||| | |||||| |||||||||        ||||||    
T  14674207 tttgcttaaagttttctgcactgttttgaaggatttaatcgtcatattattgtttaaatcggcaatattttaatctacatattaattatctattggatga 14674306  T
Q  316 attgttgaaatgatttagtgtgctctatgttgccatata----gcttggtaattgctctttggt-ggcct--ttgcaacatatatacgtacaatgataaa 408  Q
    |||||||||||||||||||| ||||||||||| ||||||    ||||||||||| |||||| || |||||  | | |||| ||   |||||||||  |||    
T  14674307 attgttgaaatgatttagtgggctctatgttgacatatacactgcttggtaatttctcttttgttggcctagtaggaacacatg--cgtacaatgggaaa 14674404  T
Q  409 aataagtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatagg-agctcatgttgtaactcatacctttctcggccttt 507  Q
     |   ||||||||||||| | |||||||| |||| ||||| ||||| ||||||||||||  |   |||  || ||  |||||||||||||||||||||||    
T  14674405 ta---gtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggccttt 14674500  T
Q  508 tggttaagatcaagtgtagtatctgttctt 537  Q
    ||| ||||||||||||||||||||||||||    
T  14674501 tggctaagatcaagtgtagtatctgttctt 14674530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 224 - 537
Target Start/End: Original strand, 14679585 - 14679908
Alignment:
Q  224 tttgcttcaagttttgtgcattgttttgcaggatttattctgcatattattgtttaaatcagcaatactctaatctgcatattaat--------ggatga 315  Q
    ||||||| ||||||| |||| ||||||| |||||||| ||  |||||||||||||||||| |||||| | |||||| |||||||||        ||||||    
T  14679585 tttgcttaaagttttctgcactgttttgaaggatttaatcgtcatattattgtttaaatcggcaatattttaatctacatattaattatctattggatga 14679684  T
Q  316 attgttgaaatgatttagtgtgctctatgttgccatata----gcttggtaattgctctttggt-ggcct--ttgcaacatatatacgtacaatgataaa 408  Q
    |||||||||||||||||||| ||||||||||| ||||||    ||||||||||| |||||| || |||||  | | |||| ||   |||||||||  |||    
T  14679685 attgttgaaatgatttagtgggctctatgttgacatatacactgcttggtaatttctcttttgttggcctagtaggaacacatg--cgtacaatgggaaa 14679782  T
Q  409 aataagtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatagg-agctcatgttgtaactcatacctttctcggccttt 507  Q
     |   ||||||||||||| | |||||||| |||| ||||| ||||| ||||||||||||  |   |||  || ||  |||||||||||||||||||||||    
T  14679783 ta---gtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggccttt 14679878  T
Q  508 tggttaagatcaagtgtagtatctgttctt 537  Q
    ||| ||||||||||||||||||||||||||    
T  14679879 tggctaagatcaagtgtagtatctgttctt 14679908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 413 - 537
Target Start/End: Original strand, 14708502 - 14708627
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatag-gagctcatgttgtaactcatacctttctcggccttttggt 511  Q
    |||||||||||||| | |||||||| |||  ||||| |||||||||||||||||| ||| |||| ||| ||  ||||||||||||||||||||||||||     
T  14708502 agtcccacatcgagcagtcaagaaagcaattgagaaaatgtcagatataaaagcactagtgagcccatctttcaactcatacctttctcggccttttggc 14708601  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14708602 taagatcaagtgtagtatctgttctt 14708627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 413 - 537
Target Start/End: Complemental strand, 14669892 - 14669767
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatag-gagctcatgttgtaactcatacctttctcggccttttggt 511  Q
    |||||||||||||| | |||||||| |||| ||||||||||| ||||||||||||  |  |||| ||| ||  ||||||||||||||||||||||||||     
T  14669892 agtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttttggc 14669793  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14669792 taagatcaagtgtagtatctgttctt 14669767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 14686562 - 14686646
Alignment:
Q  53 ttgaatgggtaaaagacatcaattggttttcaaatatgtcataccgatcaaatggtgcctatactgatctatgatgttcatattg 137  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||    
T  14686562 ttgaatgtgtaaaagacatcatttggttttcaaatatttcatactggtcaaatggtgcatatactgatctatgatgttcatattg 14686646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 14667666 - 14667599
Alignment:
Q  83 caaatatgtcataccgatcaaatggtgcctatactgatctatgatgttcatattggatgatctatgat 150  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14667666 caaatatgtcatactgatcaaatggtgcctataccaatctatgatgttcatattggatgatctatgat 14667599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 224 - 537
Target Start/End: Original strand, 14681331 - 14681648
Alignment:
Q  224 tttgcttcaagttttgtgcattgttttgcaggatttattctgcatattattgtttaaatcagcaatactctaatctgcatattaatg--------gatga 315  Q
    ||||||| ||||||| | || ||||||| | |||| | ||  |||||||||||||||||| |||||| | |||||| ||||||||||        |||||    
T  14681331 tttgcttaaagttttcttcactgttttgaatgattgaatcatcatattattgtttaaatcggcaatattttaatctacatattaatgatctattggatga 14681430  T
Q  316 attgttgaaatgatttagtgtgctctatgttgccatatagcttggtaattgctctttggt-ggcct--ttgcaacatatatacgtacaatgataaaaata 412  Q
    ||||  |||||||||||||  ||||||||||| |||||||  |||||||| |||||| || |||||  | | |||| ||   |||||||||  ||| |      
T  14681431 attgcagaaatgatttagtaggctctatgttggcatatag--tggtaatttctcttttgttggcctagtaggaacacatg--cgtacaatgggaaata-- 14681524  T
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatagg-agctcatgttgtaactcatacctttctcggccttttggt 511  Q
     ||||||||||||| | |||||||| |||| ||||| ||||| ||||||||||||  |   ||| ||| ||  |||| |||||||||||||||||||||     
T  14681525 -gtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagcccatttttcaacttatacctttctcggccttttggc 14681622  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14681623 taagatcaagtgtagtatctgttctt 14681648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 413 - 537
Target Start/End: Original strand, 14706012 - 14706137
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatag-gagctcatgttgtaactcatacctttctcggccttttggt 511  Q
    |||||||||||||| | ||||||||  ||| |||||| | || ||||||||||||  |  |||| ||| ||  ||||||||||||||||||||||||||     
T  14706012 agtcccacatcgagcagtcaagaaagaaactgagaacgtttctgatataaaagcagcaccgagcccatctttcaactcatacctttctcggccttttggc 14706111  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14706112 taagatcaagtgtagtatctgttctt 14706137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 413 - 537
Target Start/End: Original strand, 14716215 - 14716340
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatag-gagctcatgttgtaactcatacctttctcggccttttggt 511  Q
    |||||||||| ||| | ||| ||||| ||| ||||| ||||| ||||||||||||  |  ||| |||| ||  ||||||||||||||||||||||||||     
T  14716215 agtcccacattgagcagtcacgaaaataactgagaagatgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggccttttggc 14716314  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14716315 taagatcaagtgtagtatctgttctt 14716340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 537
Target Start/End: Complemental strand, 14654523 - 14654398
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaataggagctc-atgttgtaactcatacctttctcggccttttggt 511  Q
    |||||||||||||| | |||||||| |||| ||||| |||||  |||||||||||  ||    || || ||  ||||||||||||||||||||||||||     
T  14654523 agtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggc 14654424  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14654423 taagatcaagtgtagtatctgttctt 14654398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 537
Target Start/End: Complemental strand, 14664314 - 14664189
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaataggagctc-atgttgtaactcatacctttctcggccttttggt 511  Q
    |||||||||||||| | |||||||| |||| ||||| |||||  |||||||||||  ||    || || ||  ||||||||||||||||||||||||||     
T  14664314 agtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggc 14664215  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14664214 taagatcaagtgtagtatctgttctt 14664189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 537
Target Start/End: Original strand, 14676556 - 14676681
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatagg-agctcatgttgtaactcatacctttctcggccttttggt 511  Q
    |||||||||||||| | |||||||| |||| ||||| ||||| | |||||||||   ||  ||  ||| ||  ||||||||||||||||||||||||||     
T  14676556 agtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggc 14676655  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14676656 taagatcaagtgtagtatctgttctt 14676681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 537
Target Start/End: Original strand, 14683674 - 14683799
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatagg-agctcatgttgtaactcatacctttctcggccttttggt 511  Q
    |||||||||||||| | |||||||| |||| ||||| ||||| | |||||||||   ||  ||  ||| ||  ||||||||||||||||||||||||||     
T  14683674 agtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggc 14683773  T
Q  512 taagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||    
T  14683774 taagatcaagtgtagtatctgttctt 14683799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 28366309 - 28366257
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28366309 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 28366257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 33988067 - 33988119
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33988067 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 33988119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 38175640 - 38175588
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38175640 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 38175588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 413 - 537
Target Start/End: Original strand, 14652449 - 14652574
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaataggagctcatg--ttgtaactcatacctttctcggccttttgg 510  Q
    |||||||||||||| | ||||||||||||| ||||| ||||| ||||||| ||||  ||  | || |   ||| || |||||||||||||||||||||||    
T  14652449 agtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttcattgaaa-tcatacctttctcggccttttgg 14652547  T
Q  511 ttaagatcaagtgtagtatctgttctt 537  Q
     ||||||||||||||||||||||||||    
T  14652548 ctaagatcaagtgtagtatctgttctt 14652574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 413 - 537
Target Start/End: Original strand, 14662240 - 14662365
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaataggagctcatg--ttgtaactcatacctttctcggccttttgg 510  Q
    |||||||||||||| | ||||||||||||| ||||| ||||| ||||||| ||||  ||  | || |   ||| || |||||||||||||||||||||||    
T  14662240 agtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttcattgaaa-tcatacctttctcggccttttgg 14662338  T
Q  511 ttaagatcaagtgtagtatctgttctt 537  Q
     ||||||||||||||||||||||||||    
T  14662339 ctaagatcaagtgtagtatctgttctt 14662365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 537
Target Start/End: Complemental strand, 11872585 - 11872539
Alignment:
Q  491 tacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||  |||||||||||||| |||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttctt 11872539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 537
Target Start/End: Original strand, 37422175 - 37422218
Alignment:
Q  494 ctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||| ||||||||||||||| || |||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttctt 37422218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 14708407 - 14708473
Alignment:
Q  311 gatgaattgttgaaatgatttagtgtgctctatgttgccatata----gcttggtaattgctctttg 373  Q
    ||||||||| ||||||||||||||| | ||| ||||| ||||||    |||||||||||||||||||    
T  14708407 gatgaattgctgaaatgatttagtgggatctttgttggcatatactctgcttggtaattgctctttg 14708473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 200 - 537
Target Start/End: Original strand, 30733696 - 30734037
Alignment:
Q  200 cggacaccgagttttgagaaaaggtttgcttcaagttttgtgcattgttttgcaggatttattctgcatattattgtttaaatcagcaatactctaatct 299  Q
    ||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||  |||||   ||||||    
T  30733696 cggacaccgagttttaaaaaaacgtttgcttcaagttttgtgcactgttttgcaggatttaatctgcatattattattcaaatcgacaatatcttaatct 30733795  T
Q  300 gcatattaatgg--------atgaattgttgaaatgatttagtgtgctctatgttgccatatagcttggtaattgctctttggtggcctttgcaacatat 391  Q
    ||||||||||||        |||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||| |||    
T  30733796 gcatattaatggtctaatggatgaattgctgaaaggatttagtgtgctctatgttggcatatagcttggtagttgctctttggtgggctttgtaacgtat 30733895  T
Q  392 atacgtacaatgataaaaataagtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaataggagctcatgttgtaactcat 491  Q
      |  |||||||||||||||  ||||||||||||||| ||||||||||||  ||||||||||||||||||||||||  |||| |||||||||||||| ||    
T  30733896 gca--tacaatgataaaaat--gtcccacatcgaggagtcaagaaaacaagtgagaacatgtcagatataaaagcagcaggatctcatgttgtaacttat 30733991  T
Q  492 acctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  30733992 acctttctcggccttttggctaagatcaagtgtagtatctgttctt 30734037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 306 - 537
Target Start/End: Original strand, 30731832 - 30732057
Alignment:
Q  306 taatggatgaattgttgaaatgatttagtgtgctctatgttgccatata----gcttggtaattgctctttggtggcctttgcaacatatatacgtacaa 401  Q
    |||||||||||||| ||||||| ||||||| ||||||||||| ||||      ||||||||||||||||||| ||||      |||| ||   |||||||    
T  30731832 taatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctctttgttggc------aacacatg--cgtacaa 30731923  T
Q  402 tgataaaaataagtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagcaatag-gagctcatgttgtaactcatacctttctc 500  Q
    ||| ||| |   ||||||||||||| | |||||||| |||| ||||||||||| ||||||||||||  |  |||| ||| ||  ||||||||||||||||    
T  30731924 tgagaaata---gtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctc 30732020  T
Q  501 ggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||| ||||||||||||||||||||||||||    
T  30732021 ggccttttggctaagatcaagtgtagtatctgttctt 30732057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 30733537 - 30733607
Alignment:
Q  80 tttcaaatatgtcataccgatcaaatggtgcctatactgatctatgatgttcatattggatgatctatgat 150  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30733537 tttcaaatatgtcatacagatcaaatggtgcctatactgatctatgatgttcatattcgatgatctatgat 30733607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 9032050 - 9032102
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032050 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 9032102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 8973309 - 8973361
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8973309 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 8973361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 8979319 - 8979371
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8979319 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 8979371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 9008018 - 9008070
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 9008070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 9023444 - 9023496
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9023444 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 9023496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 9026783 - 9026835
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9026783 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 9026835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 32918077 - 32918129
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32918077 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 32918129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 43850046 - 43850098
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43850046 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 43850098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 487 - 537
Target Start/End: Complemental strand, 2841125 - 2841075
Alignment:
Q  487 ctcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 2841075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 8984690 - 8984742
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  8984690 aactcatacctttctcggccttttggctaagatcaagtgtagtatttgttctt 8984742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 9020847 - 9020896
Alignment:
Q  488 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  9020847 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttctt 9020896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 537
Target Start/End: Complemental strand, 19232504 - 19232457
Alignment:
Q  490 atacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttctt 19232457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 9030395 - 9030447
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||  ||||| |||||||||| ||||||||||||||||||||||||||    
T  9030395 aactcatatttttcttggccttttggctaagatcaagtgtagtatctgttctt 9030447  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 537
Target Start/End: Original strand, 8992144 - 8992197
Alignment:
Q  484 taactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||| |||||||| | ||||||| |||||||||||||||||| |||||||    
T  8992144 taactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttctt 8992197  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 537
Target Start/End: Original strand, 9016489 - 9016542
Alignment:
Q  484 taactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||  ||| |||||||| ||||||||| ||||||||||||||||    
T  9016489 taactcataccttattcgaccttttggctaagatcaaatgtagtatctgttctt 9016542  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 32918006 - 32918059
Alignment:
Q  413 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagca 467  Q
    ||||||||||||||||||||||||| ||||  |||| ||| ||||||||||||||    
T  32918006 agtcccacatcgaggaatcaagaaagcaacatagaaaatg-cagatataaaagca 32918059  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 537
Target Start/End: Original strand, 8988452 - 8988504
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||| ||||| |||| ||||||||||  ||||||||||||||||| |||||||    
T  8988452 aacttataccattcttggccttttggcgaagatcaagtgtagtatttgttctt 8988504  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 1716563 - 1716510
Alignment:
Q  484 taactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1716563 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 1716510  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 3643640 - 3643689
Alignment:
Q  488 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 3643689  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 7524968 - 7525017
Alignment:
Q  488 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7524968 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 7525017  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 492 - 537
Target Start/End: Original strand, 4103249 - 4103294
Alignment:
Q  492 acctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttctt 4103294  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 11652503 - 11652450
Alignment:
Q  484 taactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11652503 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 11652450  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 49106639 - 49106587
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49106639 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 49106587  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 49108743 - 49108691
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49108743 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 49108691  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 50077309 - 50077257
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50077309 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 50077257  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 488 - 537
Target Start/End: Complemental strand, 3461249 - 3461200
Alignment:
Q  488 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3461249 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 3461200  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 537
Target Start/End: Complemental strand, 26984773 - 26984725
Alignment:
Q  489 catacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttctt 26984725  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 489 - 537
Target Start/End: Complemental strand, 26998846 - 26998798
Alignment:
Q  489 catacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttctt 26998798  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 537
Target Start/End: Original strand, 48205832 - 48205880
Alignment:
Q  489 catacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttctt 48205880  T

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Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 10791762 - 10791710
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10791762 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 10791710  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 485 - 537
Target Start/End: Complemental strand, 10796000 - 10795948
Alignment:
Q  485 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10796000 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctt 10795948  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 30521242 - 30521291
Alignment:
Q  488 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttctt 30521291  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 537
Target Start/End: Original strand, 8875691 - 8875738
Alignment:
Q  490 atacctttctcggccttttggttaagatcaagtgtagtatctgttctt 537  Q
    |||| |||| ||||||||||| |||||||||||||| |||||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttctt 8875738  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 536
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  490 atacctttctcggccttttggttaagatcaagtgtagtatctgttct 536  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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