View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7796_high_4 (Length: 330)
Name: NF7796_high_4
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 1319511 - 1319807
Alignment:
| Q |
8 |
ttggtgttctcatcatcactgcacttacaaaactaattagtttgatttagttagtattagattgcatgcatgaccaaaatagaaagattaattagtatcg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1319511 |
ttggtgttctcatcatcactgcacttacaaaactaattagtttgatttagttagtattagattgcatgcatgaccaaaatagaaagattaattagta--- |
1319607 |
T |
|
| Q |
108 |
tagaagaatccaaacctatactatgaagtggattgaggatgtttagaactaattaatatttaacgtacaacttgttatttataaggtggtgatgtctggt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1319608 |
--gaagaatccaaacctatactatgaagtggattgaggatgtttagaactaattaatatttaacgtacaacttgttatttataaggtggtgatgtctggt |
1319705 |
T |
|
| Q |
208 |
tttaatttgttacttatatttatacatgtaaaatgttgtgatgggaaattccaagtttgtcctgtatgtatattttatattcaagtcatatagctagttc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1319706 |
tttaatttgttacttatatttatacatgt--aatgttgtgatgggaaattccaagtttgtcctgtatgtatattttatattcaagtcatatagctagttc |
1319803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University