View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7796_high_7 (Length: 271)
Name: NF7796_high_7
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37416873 - 37417110
Alignment:
| Q |
1 |
catttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatga |
100 |
Q |
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| T |
37416873 |
catttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatga |
37416972 |
T |
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| Q |
101 |
cacaatccagaggtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaa |
200 |
Q |
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| T |
37416973 |
cacaatccacaagtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatataagaaaa |
37417072 |
T |
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| Q |
201 |
aactaagttgccgttttcatcaaaagctccctgatatt |
238 |
Q |
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| T |
37417073 |
aactaagttgccgttttcatcaaaagctgcctgatatt |
37417110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37424405 - 37424642
Alignment:
| Q |
1 |
catttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactcacataatgctaatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37424405 |
catttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggacttacataatgctaatga |
37424504 |
T |
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| Q |
101 |
cacaatccagaggtgttccaaacacctcaaatgacttgacagcattatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaa |
200 |
Q |
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| T |
37424505 |
cacaatccacaagtgttccaaacacctcaaatgacttgacagcattatttccaacagaatttgtcatcacagtttttccaatagtaaaaatatatgaaaa |
37424604 |
T |
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| Q |
201 |
aactaagttgccgttttcatcaaaagctccctgatatt |
238 |
Q |
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| T |
37424605 |
aactaagttgccgttttcatcaaaagctgcctgatatt |
37424642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 8573759 - 8573811
Alignment:
| Q |
49 |
tattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgac |
101 |
Q |
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|||||||||||| |||||||||| ||||||||| |||| ||||||||||||| |
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| T |
8573759 |
tattagagaatgcaattttgttggtcaacaagggctcatgtaatgctaatgac |
8573811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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