View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7796_low_11 (Length: 312)
Name: NF7796_low_11
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_low_11 |
 | |
|
| [»] scaffold0378 (1 HSPs) |
| | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
| [»] scaffold0176 (1 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0512 (1 HSPs) |
| | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 16952969 - 16952702
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16952969 |
gtagcatagaacctttgatccttttgttccatatttccataatgatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
16952870 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16952869 |
gagctgactttggcgtggcataccaagattattgtgatgagctttgttccgagaatgttcttgaaaaaatatttgtttgttttaagcctatctttaataa |
16952770 |
T |
|
| Q |
227 |
cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16952769 |
cactctaaaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
16952702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0378 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0378
Description:
Target: scaffold0378; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 27 - 294
Target Start/End: Original strand, 4773 - 5040
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4773 |
gtagcatagaacctttgatccttttgttccatatttccacaaagatgcttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
4872 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
4873 |
gagctgactttggcgtggcataccaagattattgtgatgagctttgttccgagaatgttcttgaaaaaatatttgtttgctttaaacttatctttaataa |
4972 |
T |
|
| Q |
227 |
cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4973 |
cactcaagaacacatgttaaataacaaataatctcagaattcttttaatataatttaaatgttttgtt |
5040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 28994 - 28727
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28994 |
gtagcatagaacctttgatccttttgttccatatttccacaaagatgcttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
28895 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
28894 |
gagctgactttggcgtggcataccaagattattatgatgagctttgttccgagaatgttattgaaaaaatatttgtttgctttaaacttatctttaataa |
28795 |
T |
|
| Q |
227 |
cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28794 |
cactcaagaacacatgttaaataacaaataatctcagaattcttttaatataatttaaatgttttgtt |
28727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 14805334 - 14805073
Alignment:
| Q |
33 |
tagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgcttgagctg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14805334 |
tagaacctttgatccttttgttccatatttccacaaagatccttaacacataacttcttcttaaaagccaagatctcttattttgtctttgcttgagctg |
14805235 |
T |
|
| Q |
133 |
actttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactc |
231 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14805234 |
actttggcgtggcataccaagatta-tgtgatgagctttgttccgagaatgttcttgaaaaaagtatttgtttgctttaagtctatctttaataacactc |
14805136 |
T |
|
| Q |
232 |
aagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14805135 |
aagaacacatgttaaataacaaataatctcagaattcttttaatataatttaaatgttttgtt |
14805073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 21928413 - 21928154
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21928413 |
gtagcatagaacctttgatccttttgttccatatttccacaaagattcttaacacattacttcttcttaaaagccaagatcttctattttgtctttgctt |
21928314 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttg-ctttaagcctatctttaata |
225 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||| ||| ||| |||||| ||||| |||| ||| ||| | ||||||||| | | |
|
|
| T |
21928313 |
gagctgactttggtgtggcataccaagagtattgtgatgagttttgttc-------tttcttg--aaaatgtttgcttgtttttcaacctatcttttaaa |
21928223 |
T |
|
| Q |
226 |
acactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
21928222 |
tcactcaagaacacatgttaaataacaaataatctcagaattcatttaatataatttaaatattttgtt |
21928154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 4891919 - 4891653
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4891919 |
gtagcatagaacctttgatccttttgttccatatttccacaaagatccttaa-acaaaacttcttcttaaaagccaagatcttttattttgtctttgctt |
4891821 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataa |
226 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4891820 |
gagctgactttagcgtggcataccaagattattgtgatgagctttgttccgagaatgttcttaaaaaaatatttgtttgctttaaacctatctttaataa |
4891721 |
T |
|
| Q |
227 |
cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
|||| || ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4891720 |
cactaaaaaacacatgttaaataacaaataatttcagaattcttttaatataatttaaatgttttgtt |
4891653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 33 - 294
Target Start/End: Original strand, 27751295 - 27751556
Alignment:
| Q |
33 |
tagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgcttgagctg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27751295 |
tagaacctttgatccttttgttccatatttccacaaagatccttaacacataacttcttcttaaaagccaagatctcttattttgtctttgcttgagctg |
27751394 |
T |
|
| Q |
133 |
actttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaa-atatttgtttgctttaagcctatctttaataacactc |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27751395 |
actttggcgtggcataccaagatt-gtgtgatgagctttgttctgagaatgttcttgaaaaaggtatttgtttgctttaaacctatctttaataacactc |
27751493 |
T |
|
| Q |
232 |
aagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27751494 |
aagaacacatgttaaataacaaataatctcagaattcttttaatataatttaaatgttttgtt |
27751556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 33 - 294
Target Start/End: Original strand, 27742114 - 27742375
Alignment:
| Q |
33 |
tagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgcttgagctg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27742114 |
tagaacctttgatccttttgttccatatttccacaaagatccttaacacataacttcttcttaaaagccaagatctcttattttgtctttgcttgagctg |
27742213 |
T |
|
| Q |
133 |
actttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaa-atatttgtttgctttaagcctatctttaataacactc |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||||| | ||||||||||||||||| |
|
|
| T |
27742214 |
actttggcgtggcataccaagatt-gtgtgatgagctttgttctgagaatgttcttgaaaaaggtatttgtttgctttaaacttatctttaataacactc |
27742312 |
T |
|
| Q |
232 |
aagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27742313 |
aagaacacatgttaaataacaaataatctcagaattcttttaatataatttaaatgttttgtt |
27742375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 294
Target Start/End: Original strand, 21876783 - 21877034
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||| ||||||||||| | |||||||| |||||||| ||||||| |
|
|
| T |
21876783 |
gtagcatagaacctttgatctttttgttccatatttccacaaagatccttgacacataaattcttcttaaacactaagatcttctattttgt-tttgctt |
21876881 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgcttt-aagcctatctttaata |
225 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||| ||| || |||||||||| |||||||||| ||||||| | ||||||||||| | |
|
|
| T |
21876882 |
gagctgactttggtgtggca---------catggtgatgagctttgttctgataatgttcttg--aaaatatttgcttgctttgcaacctatctttaaaa |
21876970 |
T |
|
| Q |
226 |
acactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||||||| |
|
|
| T |
21876971 |
tcactcaagaacacatgttaaataacaaataatctcataa-----tttatataatttaaatgttttgtt |
21877034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 294
Target Start/End: Complemental strand, 16209535 - 16209352
Alignment:
| Q |
100 |
ccaagatcttttattttgtctttgcttgagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatt |
199 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||||||| | | |||||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
16209535 |
ccaagatcttctattttgt-tttgcttgagttgactttggcgtggcaca---------tggtgatgagctttgttctgagaatgttcttgaaaa--tatt |
16209448 |
T |
|
| Q |
200 |
tgtttgcttta-agcctatctttaataacactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
|| ||||||| | | ||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16209447 |
tgcttgctttgcaacatatctttaacatcactcaagaacacatgttaaataacaaataatctcagaatttatttaatataatttaaatgttttgtt |
16209352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 4048 - 3787
Alignment:
| Q |
33 |
tagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgcttgagctg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4048 |
tagaacctttgatccttttgttccatatttccacaaagatccttaacacataacttcttcttaaaagccaagatctcttattttgtctttgcttgagctg |
3949 |
T |
|
| Q |
133 |
actttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactc |
231 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948 |
actttggcgtggcataccaagatta-tgtgatgagctttgttatgagaatattcttgaaaaaagtatttgtttgctttaagcctatctttaataacactc |
3850 |
T |
|
| Q |
232 |
aagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3849 |
aagaaaacatgttaaataacaaataatctcagaattcttttaatataatttaaatgttttgtt |
3787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 28391267 - 28391006
Alignment:
| Q |
33 |
tagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgcttgagctg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28391267 |
tagaacctttgatccttttgttccatatttccacaaagatccttaacacataacttcttcttaaaagccaagatctcttattttgtctttgcttgagctg |
28391168 |
T |
|
| Q |
133 |
actttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaa-atatttgtttgctttaagcctatctttaataacactc |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28391167 |
actttggcgtggcataccaagatt-gtgtgatgagctttgttctgagaatgttcttgaaaaaggtatttgtttgctttaaacctatctttaataacactc |
28391069 |
T |
|
| Q |
232 |
aagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28391068 |
aagaacacatgttaaataacaaataatctcagaattcttttaatataatttaaatgttttgtt |
28391006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 33 - 294
Target Start/End: Complemental strand, 34143123 - 34142862
Alignment:
| Q |
33 |
tagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgcttgagctg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34143123 |
tagaacctttgatccttttgttccatatttccacaaagatccttaacacataacttcttcttaaaagccaagatctcttattttgtctttgcttgagctg |
34143024 |
T |
|
| Q |
133 |
actttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaa-tatttgtttgctttaagcctatctttaataacactc |
231 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34143023 |
actttggcgtggcataccaagatta-tgtgatgagctttgttatgagaatattcttgaaaaaagtatttgtttgctttaagcctatctttaataacactc |
34142925 |
T |
|
| Q |
232 |
aagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142924 |
aagaaaacatgttaaataacaaataatctcagaattcttttaatataatttaaatgttttgtt |
34142862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 294
Target Start/End: Original strand, 17219507 - 17219774
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| | ||||||| |||||||| ||||||||||| |||| ||||| || ||| ||||||||| |
|
|
| T |
17219507 |
gtagcatagaactcttgatccttttgttcaatatttccactaagatccttgacacataaattcttcttaaataccaatatcttctaatttatctttgctt |
17219606 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgcttt-aagcctatctttaata |
225 |
Q |
| |
|
|||||||||||| |||||||| ||||| | ||||||||| || || ||||||||||||| |||| ||||| ||||||| | ||||||||||| | |
|
|
| T |
17219607 |
gagctgactttgatgtggcatatcaagagagtggtgatgagcgttgttatgagaatgttcttg--aaaacatttgcttgctttgtaacctatctttaaaa |
17219704 |
T |
|
| Q |
226 |
a-cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| ||| || ||| | |||||||||||||| |||||||||| |
|
|
| T |
17219705 |
atcactcaagaacacattttaaataacaaataatcccataatccatttaatataatttatatgttttgtt |
17219774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 16284927 - 16284661
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16284927 |
gtagcatagaacctttgatccttttgttccatatttccacaaagatccttaacacataacttcttcttaaaagccaagatcttctattttgtctttgctt |
16284828 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataa |
226 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||||| ||||||||| ||||| | |||||| |
|
|
| T |
16284827 |
gagctcactttggcgtggcataccaagcgtattgtgatgagctttgttacgagaatgttcttga-aaaatatttgcttgctttaaacctatttgtaataa |
16284729 |
T |
|
| Q |
227 |
cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16284728 |
cactcaagaacacatgtcaaataacaaataatctcagaattcttttaatataattaaaatgttttgtt |
16284661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 25892111 - 25892278
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| || ||||||| |||||| | ||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
25892111 |
gtagcatagaactcttgatccttttgttctatatttccacaaagatccttgacacattaattcttcttaaatgccaagatcttctaatttgtctttgctt |
25892210 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaa |
194 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
25892211 |
gagctgactttggcgtggcatatcaagatagtggtgatgagctttgttctgagaatattcttgaaaaa |
25892278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 25892326 - 25892393
Alignment:
| Q |
213 |
cctatctttaataacactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataat |
280 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
25892326 |
cctatctttaaaatcactcaaaaacacatgttaaataacaaataatctcaaaattcatttaatataat |
25892393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 163061 - 162795
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
163061 |
gtagcatagaacctttgatccttttgttccatatttccacaaagattcttaacacattacttcttcttaaaagccaagatcttctattttgtctttgctt |
162962 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaata |
225 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| | |||| ||| ||| | ||||||||| | | |
|
|
| T |
162961 |
gagctgattttggcgtggcataccaagagtattgtgatgagctttgttctgagaatgttcttgaaaa--tgtttgcttgttttttaacctatcttttaaa |
162864 |
T |
|
| Q |
226 |
acactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
162863 |
tcactcaagaacacatgttaaataacaaataatctcagaattcatttaatataatttaaatgttttgtt |
162795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 29863008 - 29862748
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgctt |
126 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| || ||| ||||||||| ||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
29863008 |
gtagcatagaacctttgatccctttgttccatttttccacaaagatttttaacacattacttctt---aaaagccaagatcttctcttttgtctttgctt |
29862912 |
T |
|
| Q |
127 |
gagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataa |
226 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||| ||| |||||||||||||||||| |||| | ||| || || ||| |||||||||| |
|
|
| T |
29862911 |
gagctgactttggcgtggca--ccaagagtattgtgatgagctttgttctgagaatgttcttgaaaaa-tatt-gcttgtttaaaacctgtctttaataa |
29862816 |
T |
|
| Q |
227 |
cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29862815 |
cactcaagaatacatgttaaataacaaataatctcagagttcttttaatataatttaaatgttttgtt |
29862748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 77 - 262
Target Start/End: Complemental strand, 33239720 - 33239536
Alignment:
| Q |
77 |
aacacataacttcttcttaaaagccaagatcttttattttgtctttgcttgagctgactttggcgtggcataccaagattattgtgatgagctttattcc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || | |
|
|
| T |
33239720 |
aacacataacttcttcttaaaagccaagatcttatattttgtctttgcttgagctgactttggcgtgacataccaagagtattgtgatgagctttgttac |
33239621 |
T |
|
| Q |
177 |
gagaatgttcttgaaaaaatatttgtttgctttaagcctatctttaataacactcaagaacacatgttaaataacaaatgatctca |
262 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33239620 |
gagaatgttcttga-aaaatatttgcttgctttaaacctatctttaataacactcaagaacacatgtcaaataacaaataatctca |
33239536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 33272416 - 33272360
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacat |
83 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
33272416 |
gtagcatagaacctttgatccttttgttcaatatttccacaaagatccttaacacat |
33272360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 27 - 294
Target Start/End: Original strand, 7146 - 7412
Alignment:
| Q |
27 |
gtagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaag-ccaagatcttttattttgtctttgct |
125 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| || || ||||||| ||||||||||||||||| ||| |||||||||| || ||||||||| || |
|
|
| T |
7146 |
gtagcataaaactcttgatccttttgttccatattttcacaaagatccttgacacataacttcttctttaaataccaagatcttctaatttgtctttcct |
7245 |
T |
|
| Q |
126 |
tgagctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaat |
224 |
Q |
| |
|
|||||| ||||||| |||||||| ||||| | ||||||||||||| ||| |||||||||||||||||| |||||| ||||||| | ||||||||||| |
|
|
| T |
7246 |
tgagctaactttggtgtggcatatcaagag-agtgtgatgagctttgttctgagaatgttcttgaaaaa-tatttgcttgctttgtaacctatctttaag |
7343 |
T |
|
| Q |
225 |
aacactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||||||||||| |
|
|
| T |
7344 |
aacactcaagaacacatgttaaataacaaataatctcataa-tcatttaatataatttaaatgttttgtt |
7412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 28 - 294
Target Start/End: Original strand, 25511550 - 25511813
Alignment:
| Q |
28 |
tagcatagaacctttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgcttg |
127 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || ||| ||| |||||||| ||||| ||| |||||||||| || |||||||||| ||| |
|
|
| T |
25511550 |
tagcatagaactcttgatccttttgttccatatttccacaaagattcttgacacataaattctt---aaataccaagatcttctaatttgtctttgattg |
25511646 |
T |
|
| Q |
128 |
agctgactttggcgtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctttaataa |
226 |
Q |
| |
|
||||||||||||||||| ||| ||||| | ||||||||||| || ||||||||||||||||| || ||| ||||||| | ||||||||||||| |
|
|
| T |
25511647 |
agctgactttggcgtggtatatcaagagagtcatgatgagctttgttatgagaatgttcttgaaaacat--ttgcttgctttgtaacctatctttaatat |
25511744 |
T |
|
| Q |
227 |
-cactcaagaacacatgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
25511745 |
tcactcaagaacacatgttaaataacaaataatctcagaattctcttaatataatttaaatattttgtt |
25511813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 294
Target Start/End: Complemental strand, 1010 - 762
Alignment:
| Q |
41 |
ttgatccttttgttccatatttccataaggatccttaacacataacttcttcttaaaagccaagatcttttattttgtctttgcttgagctgactttggc |
140 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||| || |||||| || ||||||| ||| |||||||||| |
|
|
| T |
1010 |
ttgatccttttgttccatatttccacaaagatccttgacacataaattcttcttaaacaacatgatcttctaaattgtctt-----gaggtgactttggc |
916 |
T |
|
| Q |
141 |
gtggcataccaagattattgtgatgagctttattccgagaatgttcttgaaaaaatatttgtttgcttta-agcctatctt-taataacactcaagaaca |
238 |
Q |
| |
|
||||||| ||||| | || ||||||||| ||| ||||||||||||||||| | ||| ||||||| | |||||||| ||| | |||||||||| | |
|
|
| T |
915 |
atggcatatcaagagagtggttatgagctttgttctgagaatgttcttgaaaacaa--ttgattgctttgtaacctatcttataaaatcactcaagaaaa |
818 |
T |
|
| Q |
239 |
catgttaaataacaaatgatctcagaattcttttaatataatttaaatgttttgtt |
294 |
Q |
| |
|
||||||||||||||||| || ||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
817 |
catgttaaataacaaataatatcataattcatttaatataatttaaatattttgtt |
762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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