View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7796_low_13 (Length: 253)
Name: NF7796_low_13
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_low_13 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 15614177 - 15614248
Alignment:
| Q |
75 |
ttaacaagaacaatgcaaaatagagaaagagataatcaaaacgataaagacggctagggttttatagaataa |
146 |
Q |
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| T |
15614177 |
ttaacaagaacaatgcaaaatagagaaagagataatcaaaacgataaagacaactagggtttcatagaataa |
15614248 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 15614312 - 15614361
Alignment:
| Q |
182 |
tgctaatataaagg-ccaataacttaagca-aatactttattatctaaca |
229 |
Q |
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| T |
15614312 |
tgctaatataaaggtccaataacttaagcccaatactttattatctaaca |
15614361 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 50294702 - 50294658
Alignment:
| Q |
185 |
taatataaaggccaataacttaagcaaatactttattatctaaca |
229 |
Q |
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| T |
50294702 |
taatataaaggtcaataacttaagccaatactttatcatctaaca |
50294658 |
T |
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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 406307 - 406359
Alignment:
| Q |
182 |
tgctaatataaaggcc-aataacttaagca-aatactttattatctaacaata |
232 |
Q |
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| T |
406307 |
tgctaatataaaggcccaataacttaaacctaatactttattatctaacaata |
406359 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 33423919 - 33423975
Alignment:
| Q |
90 |
caaaatagagaaagagataatcaaaacgataaagacggctagggttttatagaataa |
146 |
Q |
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| T |
33423919 |
caaaatagagaaagagagaacgataacaataaagacggctagggtttcgtagaataa |
33423975 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 16869579 - 16869547
Alignment:
| Q |
150 |
aataaaatctaatgaactctaacttgctaatat |
182 |
Q |
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| T |
16869579 |
aataaaatctaatgaactctaacttactaatat |
16869547 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 15629385 - 15629417
Alignment:
| Q |
150 |
aataaaatctaatgaactctaacttgctaatat |
182 |
Q |
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| T |
15629385 |
aataaaatctaatgaactctaacttactaatat |
15629417 |
T |
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