View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7796_low_14 (Length: 213)
Name: NF7796_low_14
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 34759125 - 34759305
Alignment:
| Q |
16 |
aatataaaacatacctgggaacaacaactatggatctgcagctttagagtttctggattaatgcagagaagtttagtaacaaaaatcccaatttcttgca |
115 |
Q |
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| T |
34759125 |
aatataaaacatacctgggaactacaactatgcatctgcagctttagagtttctggattaatgcagagaagtttagtaacaaaaatcccaatttttttaa |
34759224 |
T |
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| Q |
116 |
gactcttctcgttatcatcatatagagcaatatcagcaaatgctacactatgtgcctctaacaaaattgtatctgacatat |
196 |
Q |
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| T |
34759225 |
gactattctcgtgatcatcatataaagcaatatcagcaaatcctacactatgtgcctctaacaaaattgtatctgacatat |
34759305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 34751336 - 34751475
Alignment:
| Q |
57 |
ctttagagtttctggattaatgcagagaagtttagtaacaaaaatcccaatttcttgcagactcttctcgttatcatcatatagagcaatatcagcaaat |
156 |
Q |
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| T |
34751336 |
ctttagactttctggattaatactaagaagtttacaaacaaaaatcccaatttcttgcagactcttctcattatcatcatatagagcaatatcagcaaat |
34751435 |
T |
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| Q |
157 |
gctacactatgtgcctctaacaaaattgtatctgacatat |
196 |
Q |
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| T |
34751436 |
gctacactatgtgcctctaacaaaattgtatctgacatat |
34751475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 198
Target Start/End: Original strand, 34746723 - 34746867
Alignment:
| Q |
54 |
cagctttagagtttctggattaatgcagagaagtttagtaacaaaaatcccaatttcttgcagactcttctcgttatcatcatatagagcaatatcagca |
153 |
Q |
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| T |
34746723 |
cagctttagacattctggattaatactgagaagtttacaaacaaaaatcccaatttcttgcggactcttcttgttcttattatataaagtaatatcagca |
34746822 |
T |
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| Q |
154 |
aatgctacactatgtgcctctaacaaaattgtatctgacatatga |
198 |
Q |
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| T |
34746823 |
gatgctacactatgtccctcaaacaaaattgtatctgacatatga |
34746867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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