View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7796_low_3 (Length: 445)
Name: NF7796_low_3
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 1719576 - 1719999
Alignment:
| Q |
21 |
agagctgacattctaaatgtttagtaatgagcctttacatggagcttcttactatgacagaaattccattttatacattattacgctacatgtttcatta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1719576 |
agagctgacattctaaatgtttagtaatgagcctttatatggagcttcttactatgacagaaattccattttatacattattacgctacatgttccatta |
1719675 |
T |
|
| Q |
121 |
aagtgtattccaagataattaagtctttcttaaactggattttcagtctttgaatttctgttgtgtgcatacctggtcttaagtttcctcagagtttcat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1719676 |
aagtgtattccaagataattaagtctttcttaaactggattttcagtctttgaatttctgttgtgtgcatacctggtcttaagtttcctcagagtttcat |
1719775 |
T |
|
| Q |
221 |
tctgattactctttcggtgctcgtccttggcggatattgttgcccaaaatgaagtatttatttttgtaggaattaaacatgtaaactgctggttcagtct |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1719776 |
tctgattactctttcggtgctcgtccttggcggatattgttgcccaaaatgaagtatttatttttgtaggaattaaacatgtaaactgctggttcagtct |
1719875 |
T |
|
| Q |
321 |
taattcggaaaaacatctccaatgttgtgctggttggtttgcttatgccttcactgcatcttattcgattatgacatttagcagggggttatgcgttcat |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1719876 |
taattcggaaaaacatctccaatgttgtgctggttggtttgcttatgccttcactgcatcttattcgattatgaaatttagcagggggttatgcgttcat |
1719975 |
T |
|
| Q |
421 |
tgcatcttactcgattatgacatt |
444 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1719976 |
tgcatcttactcgattatgacatt |
1719999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 25421786 - 25421901
Alignment:
| Q |
21 |
agagctgacattctaaatgtttagtaatgagcctttacatggagcttcttactatgacagaaattccattttatacattattacgctacatgtttcatta |
120 |
Q |
| |
|
||||||| |||||||||||||| | |||||||||||| ||||||||| | | |||||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
25421786 |
agagctggcattctaaatgttttgcaatgagcctttatatggagcttataat----acagaaattccattttatacattattactcaacatgttccatta |
25421881 |
T |
|
| Q |
121 |
aagtgtattccaagataatt |
140 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
25421882 |
aagtgtattccaggataatt |
25421901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 32304182 - 32304259
Alignment:
| Q |
151 |
taaactggattttcagtctttgaatttctgttgt-------gtgcatacctggtcttaagtttcctcagagtttcatt |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
32304182 |
taaactggaatttcagtctttgaatttctgttgtgtcttgtgtgcatacctggtcttaattttcctcagagtctcatt |
32304259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 32304125 - 32304173
Alignment:
| Q |
82 |
aattccattttatacattattacgctacatgtttcattaaagtgtattc |
130 |
Q |
| |
|
|||||||||||| |||| ||||| |||| |||| ||||||||||||||| |
|
|
| T |
32304125 |
aattccattttaaacatgattactctacgtgttccattaaagtgtattc |
32304173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University