View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7796_low_4 (Length: 412)
Name: NF7796_low_4
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 30058231 - 30058460
Alignment:
| Q |
11 |
gtggtatgtcattctctaataaagtccttgtgaggtccttccacattttgggagcactgaagtgtcacaaactgctgcctgcagaagagatatcttgtta |
110 |
Q |
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| T |
30058231 |
gtggtatgtcattctctaataaagtccttgtgaggtccttccacattttgggagcactgaagtgtcacaaactgctgcctgcagaagaggtatcttgtgt |
30058330 |
T |
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| Q |
111 |
cattaaagcagattacagtgttcacacaaaacagaatctcttgtgacaattaattattccaacacttgcatatatgcttcagacagatttcaaaaactta |
210 |
Q |
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| T |
30058331 |
cattaaagcagattacagtgttcacacaaaacagaatctcttgtgacaattaattattccaacacttgcatatatgcttcagacagatttcaaaaactta |
30058430 |
T |
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| Q |
211 |
gaaaattgttttggaagtatcaaattatct |
240 |
Q |
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| T |
30058431 |
gaaaattgttttggaagtatcaaattatct |
30058460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 30060897 - 30060986
Alignment:
| Q |
11 |
gtggtatgtcattctctaataaagtccttgtgaggtccttccacattttgggagcactgaagtgtcacaaactgctgcctgcagaagaga |
100 |
Q |
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| T |
30060897 |
gtggtatgtcattctctaataaagcccttgtgaggtccttccacaatttgggagcactgaagtgtcacaaactgctgcctgcagaagaga |
30060986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 30058539 - 30058615
Alignment:
| Q |
319 |
tagataccaagtaacttgattagaattcagagttaaaggaatcaaaatnnnnnnnntaataaattataacatgttaa |
395 |
Q |
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| T |
30058539 |
tagataccaagtaacttgattagaattcagagttaaaggaatcaaaataaaaaaaataataaattataacatgttaa |
30058615 |
T |
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