View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7796_low_5 (Length: 403)
Name: NF7796_low_5
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_low_5 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 52 - 403
Target Start/End: Original strand, 37416482 - 37416833
Alignment:
| Q |
52 |
tttgcaagagctgtgtattatttgtttcctcaaaggggactgtctcatccactcatatctttctgttaacgatgcagctaccgtgtcatcatagaaacta |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37416482 |
tttgcaagagctgtgtattatttgtttcctcagaggggactgtctcatccactcatatctttctgttaacgatgcagctaccgtgtcgtcatagaaacta |
37416581 |
T |
|
| Q |
152 |
gtannnnnnncagttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgtttt |
251 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37416582 |
gtatttttttcagttctttaagaatgctaaaggcatcttctgacatgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgttct |
37416681 |
T |
|
| Q |
252 |
agcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgcagaaacaaccagctttattgtctctgcat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
37416682 |
agcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaacaaccaactttattgtctctacat |
37416781 |
T |
|
| Q |
352 |
aaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcag |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37416782 |
aaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcag |
37416833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 52 - 403
Target Start/End: Original strand, 37424014 - 37424365
Alignment:
| Q |
52 |
tttgcaagagctgtgtattatttgtttcctcaaaggggactgtctcatccactcatatctttctgttaacgatgcagctaccgtgtcatcatagaaacta |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37424014 |
tttgcaagagctgtgtattatttgtttcctcataggggactgtctcatccactcatatctttctgttaacgatgcagctaccgtgtcgtcatagaaacta |
37424113 |
T |
|
| Q |
152 |
gtannnnnnncagttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgtttt |
251 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37424114 |
gtatttttttcagttctttaagaatgctaaaggcatcttctgacatgaatgtgcaagagtaacaagcatttactgatattccaatgttcccaagtgttct |
37424213 |
T |
|
| Q |
252 |
agcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgcagaaacaaccagctttattgtctctgcat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
37424214 |
agcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaacaaccaactttattgtctctacat |
37424313 |
T |
|
| Q |
352 |
aaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcag |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37424314 |
aaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcag |
37424365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University