View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7796_low_7 (Length: 354)
Name: NF7796_low_7
Description: NF7796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7796_low_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 43860278 - 43859942
Alignment:
| Q |
18 |
tatatgaccacatgcgtcggagtcactttggacacaaacacatattctaaagtgtcggtgctaaattattcaaacaaactagttaaattaacttattggc |
117 |
Q |
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| T |
43860278 |
tatatgaccacatgcgtcggagtcactttggacacaaacgcatattctaaagtgtcgatgctaaattattcaaacaaactagttaaattaacttattggc |
43860179 |
T |
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| Q |
118 |
tatacgtatgtataggagcacacacaattggagtaggacattgcaacttattcagcaacaggcttttcaacttcactggaaaaggtgatcaagatccatc |
217 |
Q |
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| T |
43860178 |
tatacgtatgtataggagcacacacaattggagtaggacattgcaacttattcagcaacaggcttttcaacttcactggaaaaggtgatcaagatccatc |
43860079 |
T |
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| Q |
218 |
tctgaatccaacttatgcaaatttcttgaagaccaaatgccaaggcctaagtgacaccactacaacagtcgaaatggatcctaatagctcaacaacattt |
317 |
Q |
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| T |
43860078 |
tctaaatccaacttacgcaaatttcttgaagaccaaatgccaaggcctaagtgacaccactacaacagtcgaaatggatcctaatagctcaacaacattt |
43859979 |
T |
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| Q |
318 |
gacaatgactattatcctgtccttctacaaaacaagg |
354 |
Q |
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| T |
43859978 |
gacaatgactattatcctgtccttctacaaaacaagg |
43859942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 43858328 - 43858271
Alignment:
| Q |
297 |
cctaatagctcaacaacatttgacaatgactattatcctgtccttctacaaaacaagg |
354 |
Q |
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| T |
43858328 |
cctaatagctcaacaacatttgacaatgactattatcctgtccttctacaaaacaagg |
43858271 |
T |
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