View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7797_low_1 (Length: 458)

Name: NF7797_low_1
Description: NF7797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7797_low_1
NF7797_low_1
[»] chr2 (11 HSPs)
chr2 (10-441)||(37065467-37065896)
chr2 (9-66)||(44132595-44132652)
chr2 (13-75)||(11133072-11133135)
chr2 (13-74)||(14307730-14307791)
chr2 (13-72)||(18065254-18065313)
chr2 (9-43)||(16028140-16028174)
chr2 (12-50)||(45314432-45314470)
chr2 (13-62)||(917327-917376)
chr2 (10-75)||(34830584-34830648)
chr2 (13-73)||(1244568-1244628)
chr2 (13-77)||(2114471-2114535)
[»] chr7 (14 HSPs)
chr7 (15-73)||(10474550-10474608)
chr7 (10-74)||(37410514-37410578)
chr7 (13-76)||(7465462-7465525)
chr7 (13-76)||(11808034-11808097)
chr7 (13-75)||(43635585-43635647)
chr7 (14-74)||(32814825-32814885)
chr7 (10-77)||(3481201-3481268)
chr7 (13-71)||(10020505-10020563)
chr7 (13-75)||(27726405-27726467)
chr7 (13-67)||(43712349-43712403)
chr7 (13-75)||(45267962-45268024)
chr7 (13-62)||(23799310-23799359)
chr7 (13-50)||(33236303-33236340)
chr7 (11-43)||(7162702-7162734)
[»] chr8 (15 HSPs)
chr8 (14-76)||(216184-216246)
chr8 (14-76)||(692744-692806)
chr8 (14-76)||(696953-697015)
chr8 (14-76)||(729807-729869)
chr8 (14-76)||(853702-853764)
chr8 (10-77)||(43468738-43468805)
chr8 (13-72)||(26657856-26657915)
chr8 (13-75)||(33982186-33982249)
chr8 (14-76)||(220399-220461)
chr8 (14-76)||(689554-689616)
chr8 (14-76)||(734022-734084)
chr8 (14-76)||(857918-857980)
chr8 (13-75)||(29937207-29937269)
chr8 (13-75)||(39432364-39432426)
chr8 (14-66)||(36593200-36593252)
[»] chr5 (11 HSPs)
chr5 (13-75)||(7147055-7147117)
chr5 (13-77)||(42801477-42801541)
chr5 (13-76)||(36742003-36742066)
chr5 (11-67)||(38040271-38040327)
chr5 (13-75)||(6806676-6806739)
chr5 (20-74)||(11246537-11246591)
chr5 (13-75)||(40250213-40250275)
chr5 (13-75)||(42553177-42553238)
chr5 (13-66)||(42781630-42781683)
chr5 (13-76)||(18872517-18872580)
chr5 (13-73)||(32252955-32253015)
[»] chr1 (15 HSPs)
chr1 (13-75)||(9768845-9768907)
chr1 (14-76)||(47645833-47645895)
chr1 (10-75)||(42908768-42908833)
chr1 (13-75)||(42801876-42801938)
chr1 (13-75)||(52961118-52961180)
chr1 (10-75)||(41677057-41677122)
chr1 (13-73)||(5862127-5862187)
chr1 (15-75)||(18003813-18003873)
chr1 (14-73)||(11238065-11238124)
chr1 (13-75)||(7906362-7906424)
chr1 (29-75)||(51917554-51917600)
chr1 (13-62)||(50199512-50199561)
chr1 (13-49)||(2903063-2903099)
chr1 (32-72)||(37693955-37693995)
chr1 (14-77)||(40814803-40814866)
[»] chr4 (12 HSPs)
chr4 (13-76)||(27921892-27921955)
chr4 (13-72)||(52556711-52556770)
chr4 (10-72)||(20610739-20610801)
chr4 (17-73)||(49319392-49319448)
chr4 (13-75)||(12820441-12820504)
chr4 (14-63)||(25259456-25259506)
chr4 (13-75)||(33359814-33359876)
chr4 (13-75)||(41492534-41492596)
chr4 (13-76)||(33076528-33076589)
chr4 (13-76)||(35909199-35909262)
chr4 (14-74)||(39293519-39293579)
chr4 (6-77)||(50657875-50657946)
[»] chr6 (8 HSPs)
chr6 (13-75)||(25064705-25064767)
chr6 (6-67)||(1488093-1488154)
chr6 (10-67)||(14949053-14949110)
chr6 (15-75)||(34524872-34524932)
chr6 (7-77)||(18631467-18631537)
chr6 (13-67)||(30833022-30833076)
chr6 (10-77)||(8233081-8233148)
chr6 (14-74)||(10442883-10442943)
[»] scaffold0168 (1 HSPs)
scaffold0168 (14-75)||(34070-34131)
[»] chr3 (13 HSPs)
chr3 (13-73)||(24160564-24160624)
chr3 (10-77)||(42271046-42271113)
chr3 (29-76)||(2903704-2903751)
chr3 (10-77)||(16277984-16278051)
chr3 (10-77)||(31902238-31902305)
chr3 (14-72)||(4478405-4478463)
chr3 (13-75)||(16874226-16874288)
chr3 (13-75)||(24130556-24130618)
chr3 (13-67)||(33533208-33533262)
chr3 (29-74)||(3973300-3973345)
chr3 (29-74)||(3996531-3996576)
chr3 (13-77)||(43566832-43566896)
chr3 (11-74)||(43598796-43598860)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Original strand, 37065467 - 37065896
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgggacccaatcacannnnnnn-aagagatagaagtct 108  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||        |||||||||||||||    
T  37065467 ggagttcgaaccccgaccactgcatataacaatgcatgtccataccaacagagctatgctcacgggacccaatcacattttttttaagagatagaagtct 37065566  T
Q  109 agtttcgtttatatcaacttaaaatggtatctagatggatgtaataattcacacactatacaaaaaacttctaggttaaattttccacgtgccatataat 208  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37065567 agtttcgtttatatcaacttaaattggtatctagatggatgtaataattcacacactatacaaaaaacttctaggttaaattttccacgtgccatataat 37065666  T
Q  209 aataaattgccaactaagctgccacaaccacccaaatttgaacacgtcctaaactcccctttgaagtaacactcactcccctctaaagggaaaatagctt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37065667 aataaattgccaactaagctgccacaaccacccaaatttgaacacgtcctaaactcccctttgaagtaacactcactcccctctaaagggaaaatagctt 37065766  T
Q  309 caactaattaagtaaaccaaccaataaaattaatccttttaaaactcatattcaaagtgtgcctattttttcaactattatataaaggccgcaatatcaa 408  Q
    |||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37065767 caactaattaagtaaaccaaccaataaaattaatc---taaaaactcatattcaaagtgtgcctattttttcaactattatataaaggccgcaatatcaa 37065863  T
Q  409 actatagccttaaacacaaaatatggagatgga 441  Q
    || ||||||||||||||||||||||||||||||    
T  37065864 accatagccttaaacacaaaatatggagatgga 37065896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 44132595 - 44132652
Alignment:
Q  9 tggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctat 66  Q
    ||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||    
T  44132595 tggagttcgaaccccgacctctgcatataacaatgcatgtctctgccaactgagctat 44132652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 11133135 - 11133072
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||||||| ||||||||||||||| | ||||  |||||||||||||||| |||||||    
T  11133135 gttcgaaccccgacccctgcatataacaatgcattgtccctaccaactgagctatgctcacggg 11133072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 14307730 - 14307791
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgg 74  Q
    ||||||||| ||||| ||||||||||||||| |||||  |||||||||||| ||| ||||||    
T  14307730 gttcgaacctcgacccctgcatataacaatgcatgtccctaccaactgagccatgctcacgg 14307791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 18065313 - 18065254
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcac 72  Q
    ||||||||| | ||| ||||||||||||||| ||| || |||||||||||||||| ||||    
T  18065313 gttcgaacctcaacccctgcatataacaatgcatgcctctaccaactgagctatgctcac 18065254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 16028140 - 16028174
Alignment:
Q  9 tggagttcgaaccccgaccactgcatataacaatg 43  Q
    |||||||||||||||||||||||||||||| ||||    
T  16028140 tggagttcgaaccccgaccactgcatataataatg 16028174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 45314470 - 45314432
Alignment:
Q  12 agttcgaaccccgaccactgcatataacaatgtatgtct 50  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  45314470 agttcgaaccccgacctctgcatataacaatgcatgtct 45314432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 917327 - 917376
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgag 62  Q
    ||||||| ||||||| |||||||||| |||| |||||| |||||||||||    
T  917327 gttcgaatcccgacccctgcatataataatgcatgtctctaccaactgag 917376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 34830648 - 34830584
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||||||| || ||||||||||||||| || ||| |||||| ||||||||  |||||||    
T  34830648 ggagttcgaaccccggcc-ctgcatataacaatgcatatctctaccaagtgagctatactcacggg 34830584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 1244628 - 1244568
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacg 73  Q
    ||||||||||| ||| ||||||||| |||||||||||  | |||||||| ||||| |||||    
T  1244628 gttcgaacccccacccctgcatatagcaatgtatgtccctgccaactgaactatgctcacg 1244568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 2114471 - 2114535
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgggac 77  Q
    ||||||||||||||| || ||||||| |||| ||   | |||||||||||||||| |||||||||    
T  2114471 gttcgaaccccgacccctacatataataatgcattgttctaccaactgagctatgctcacgggac 2114535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 10474550 - 10474608
Alignment:
Q  15 tcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacg 73  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||    
T  10474550 tcgaaccccgacccctgcatataacaatgtatgtctctaccaactgaactatgctcacg 10474608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 37410514 - 37410578
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgg 74  Q
    ||||||||||||  |||| ||||||||||||||| |||||  |||||||||||||||| ||||||    
T  37410514 ggagttcgaaccttgacccctgcatataacaatgcatgtccttaccaactgagctatgctcacgg 37410578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 7465525 - 7465462
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    |||||||||||| || |||||||||| |||| |||||| | |||||||||||||| ||||||||    
T  7465525 gttcgaaccccggcccctgcatataataatgcatgtctctgccaactgagctatgctcacggga 7465462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 11808097 - 11808034
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||||||||| ||||||||||||||| |||||  |||||| ||||||| | ||||||||    
T  11808097 gttcgaaccccgacccctgcatataacaatgcatgtccctaccaattgagctaagctcacggga 11808034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 43635647 - 43635585
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||||||| ||||||||||||||| |||| | | ||||||||| |||| |||||||    
T  43635647 gttcgaaccccgaccgctgcatataacaatgcatgtttctgccaactgagttatgctcacggg 43635585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 32814885 - 32814825
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgg 74  Q
    ||||||| |||||| |||||||||| |||| |||||  |||||||||||||||| ||||||    
T  32814885 ttcgaactccgacccctgcatataataatgcatgtccctaccaactgagctatgctcacgg 32814825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 3481201 - 3481268
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgggac 77  Q
    ||||||||||||||| |  ||||||||||||||| | ||| |||||| ||||| |||| |||||||||    
T  3481201 ggagttcgaaccccggctcctgcatataacaatgcacgtccataccacctgagttatgctcacgggac 3481268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 10020505 - 10020563
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatca 71  Q
    ||||||||||| ||| ||||||||||||||| |||||  |  |||||||||||||||||    
T  10020505 gttcgaaccccaacccctgcatataacaatgcatgtccctgtcaactgagctatgatca 10020563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 27726405 - 27726467
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||||| ||||||| ||||| |||| |||||  | |||||||||||||| |||||||    
T  27726405 gttcgaaccccggccactgcttataataatgcatgtccctgccaactgagctatgttcacggg 27726467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 43712349 - 43712403
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatg 67  Q
    ||||||||||||||| ||| ||||||||||| |||||  ||||||||||| ||||    
T  43712349 gttcgaaccccgacccctgtatataacaatgcatgtccctaccaactgagttatg 43712403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 45267962 - 45268024
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||| |||||  |||||||||| ||| ||||||| | |||||||||||||| |||||||    
T  45267962 gttcgaactccgactcctgcatataataatatatgtctctgccaactgagctatgctcacggg 45268024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 23799359 - 23799310
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgag 62  Q
    ||||||| ||||||| ||||||||||||||| |||||| | |||||||||    
T  23799359 gttcgaatcccgacccctgcatataacaatgcatgtctctgccaactgag 23799310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 33236303 - 33236340
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtct 50  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  33236303 gttcgaaccccaacccctgcatataacaatgtatgtct 33236340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 7162702 - 7162734
Alignment:
Q  11 gagttcgaaccccgaccactgcatataacaatg 43  Q
    ||||||||||||||||| |||||||||||||||    
T  7162702 gagttcgaaccccgacccctgcatataacaatg 7162734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 216184 - 216246
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||||||||||||  | |||||||||||||| ||||||||    
T  216184 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgctcacggga 216246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 692744 - 692806
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||||||||||||  | |||||||||||||| ||||||||    
T  692744 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgctcacggga 692806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 696953 - 697015
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||||||||||||  | |||||||||||||| ||||||||    
T  696953 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgctcacggga 697015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 729807 - 729869
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||||||||||||  | |||||||||||||| ||||||||    
T  729807 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgctcacggga 729869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 853702 - 853764
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||||||||||||  | |||||||||||||| ||||||||    
T  853702 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgctcacggga 853764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 43468738 - 43468805
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacgggac 77  Q
    |||||||||||||||||| || |||||||||||| | ||||  |||||||||||||||| |||||||||    
T  43468738 ggagttcgaaccccgacccctacatataacaatgcattgtc-ctaccaactgagctatgctcacgggac 43468805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 26657915 - 26657856
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcac 72  Q
    ||||||||||||  | ||||||||||||||| |||||  |||||||||||||||| ||||    
T  26657915 gttcgaaccccggtccctgcatataacaatgcatgtccctaccaactgagctatgctcac 26657856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 33982249 - 33982186
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgt-atgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||||||| |||||||||||||||| |||| | |  ||||||||||||| |||||||    
T  33982249 gttcgaaccccgacccctgcatataacaatgtaatgtttctgtcaactgagctatgctcacggg 33982186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 220399 - 220461
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||| || |||||  | |||||||||||||| ||||||||    
T  220399 ttcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatgctcacggga 220461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 689554 - 689616
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||| || |||||  | |||||||||||||| ||||||||    
T  689554 ttcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatgctcacggga 689616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 734022 - 734084
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||| || |||||  | |||||||||||||| ||||||||    
T  734022 ttcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatgctcacggga 734084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 857918 - 857980
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||| |||| |||||||||||| || |||||  | |||||||||||||| ||||||||    
T  857918 ttcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatgctcacggga 857980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 29937269 - 29937207
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||| ||| || ||||||||||||||  |||||  |||||||||||||||| |||||||    
T  29937269 gttcgaactccggcccctgcatataacaatacatgtccctaccaactgagctatgctcacggg 29937207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 39432364 - 39432426
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||| ||| |||||||||||| || |||||  | |||||||||||||| |||||||    
T  39432364 gttcgaaccccaacccctgcatataacattgcatgtccctgccaactgagctatgctcacggg 39432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 36593252 - 36593200
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctat 66  Q
    |||||||||| ||| ||| ||||||||||| |||||  |||||||||||||||    
T  36593252 ttcgaaccccaacctctgtatataacaatgcatgtccctaccaactgagctat 36593200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 7147055 - 7147117
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||||||| |||||||||| |||| |||||  |||||||||||||||| |||||||    
T  7147055 gttcgaaccccgacccctgcatataataatgcatgtccttaccaactgagctatgctcacggg 7147117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 42801477 - 42801541
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgggac 77  Q
    ||||||||||||||| |||||||||| |||| ||    |||||||||||||||||||||||||||    
T  42801477 gttcgaaccccgacccctgcatataataatgcattatcataccaactgagctatgatcacgggac 42801541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 36742003 - 36742066
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||||||| | ||||||||||||||  |||||| | |||||||||||||| ||||||||    
T  36742003 gttcgaaccccgatccctgcatataacaattcatgtctctgccaactgagctatgctcacggga 36742066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 38040327 - 38040271
Alignment:
Q  11 gagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatg 67  Q
    ||||||||||| ||||| ||||||||||||||| |||||  | ||||||||||||||    
T  38040327 gagttcgaacctcgacccctgcatataacaatgcatgtccctgccaactgagctatg 38040271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 6806676 - 6806739
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacggg 75  Q
    ||||||| ||||||| ||||||||||||||| | ||||| | |||||||||||||| |||||||    
T  6806676 gttcgaatcccgacccctgcatataacaatgcattgtctctgccaactgagctatgctcacggg 6806739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 11246537 - 11246591
Alignment:
Q  20 ccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgg 74  Q
    |||||||| ||||||||||||||| |||||  | |||||||||||||| ||||||    
T  11246537 ccccgacccctgcatataacaatgcatgtccctgccaactgagctatgctcacgg 11246591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 40250213 - 40250275
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||||||  ||||||||||||||| ||||   | |||||||||||||| |||||||    
T  40250213 gttcgaaccccgactcctgcatataacaatgcatgttactgccaactgagctatgctcacggg 40250275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 42553177 - 42553238
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||||||| ||||||||||||||| |||||  |  ||||||||||||| |||||||    
T  42553177 gttcgaaccccgacc-ctgcatataacaatgcatgtcgttgtcaactgagctatgctcacggg 42553238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 42781630 - 42781683
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctat 66  Q
    ||||||||||||| | ||||||||||||||| |||||  | |||||||||||||    
T  42781630 gttcgaaccccgaaccctgcatataacaatgcatgtccctgccaactgagctat 42781683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 18872580 - 18872517
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacggga 76  Q
    ||||||||||||||| |||||||||| |||| | ||||  |||||||||||||||| ||||||||    
T  18872580 gttcgaaccccgacccctgcatataataatgcattgtc-ctaccaactgagctatgctcacggga 18872517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 32252955 - 32253015
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacg 73  Q
    ||||||||||||||| || ||||||| |||| |||||  || ||||||||||||| |||||    
T  32252955 gttcgaaccccgacccctacatataataatgcatgtccttatcaactgagctatgttcacg 32253015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 9768845 - 9768907
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||||||| ||||||||||||||| |||||  | |||||||||||||| |||||||    
T  9768845 gttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctatgctcacggg 9768907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 47645833 - 47645895
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    |||||||||||||| ||||||||||||||| |||||| | |||||||||||||| ||| ||||    
T  47645833 ttcgaaccccgacctctgcatataacaatgcatgtctctgccaactgagctatgctcatggga 47645895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 42908833 - 42908768
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||||||||||| ||||||||||||||| |||||  | |||||||||||| | |||||||    
T  42908833 ggagttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctaagctcacggg 42908768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 42801938 - 42801876
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||| ||| ||||||||||||||| |||||| |  ||||||||||||| |||||||    
T  42801938 gttcgaaccccaacctctgcatataacaatgcatgtctctgtcaactgagctatgttcacggg 42801876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 52961118 - 52961180
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||||| || ||||||||||||||| |||||  | |||||||||||||| |||||||    
T  52961118 gttcgaaccccggcccctgcatataacaatgcatgtccttgccaactgagctatgctcacggg 52961180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 41677122 - 41677057
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||||||||||| | |||||||| |||| |||||| | |||||||||||| | |||||||    
T  41677122 ggagttcgaaccccgacccccgcatataataatgaatgtctctgccaactgagctacgctcacggg 41677057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 5862187 - 5862127
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacg 73  Q
    ||||||||||||||| || |||||||||||| |||||  | |||||||||||||| |||||    
T  5862187 gttcgaaccccgacctctacatataacaatgcatgtccctgccaactgagctatgttcacg 5862127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 18003873 - 18003813
Alignment:
Q  15 tcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||| || ||||||||||||||| |||||  | |||||||||||||| |||||||    
T  18003873 tcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggg 18003813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 11238065 - 11238124
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacg 73  Q
    |||||||||||||| |||||||||| |||| ||||| || ||| |||||||||| |||||    
T  11238065 ttcgaaccccgacccctgcatataataatgcatgtccatgccatctgagctatgctcacg 11238124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 7906362 - 7906424
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||||  || ||||||||||||||| |||||  |||||||||| ||||| |||||||    
T  7906362 gttcgaaccccagcccctgcatataacaatgcatgtccctaccaactgaactatgctcacggg 7906424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 51917554 - 51917600
Alignment:
Q  29 ctgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||| |||| |||||||| |||||||||||||| |||||||    
T  51917554 ctgcatataataatgcatgtctatgccaactgagctatgctcacggg 51917600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 50199512 - 50199561
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgag 62  Q
    |||||||||||| || ||||||||||||||| |||||  |||||||||||    
T  50199512 gttcgaaccccggcccctgcatataacaatgcatgtccctaccaactgag 50199561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 2903063 - 2903099
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtc 49  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  2903063 gttcgaaccccgacctctgcatataacaatgcatgtc 2903099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 37693955 - 37693995
Alignment:
Q  32 catataacaatgtatgtctataccaactgagctatgatcac 72  Q
    ||||||||||||||||||| |||| ||||||||||| ||||    
T  37693955 catataacaatgtatgtctctaccgactgagctatgctcac 37693995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 40814803 - 40814866
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacgggac 77  Q
    |||||||||||||| |||||||||| |||| | ||||| ||| |||||||||||| |||||||||    
T  40814803 ttcgaaccccgacccctgcatataataatgcattgtct-tactaactgagctatgctcacgggac 40814866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 27921955 - 27921892
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    |||||||||||| || |||||||||| |||| |||||  |||||||||||||||| ||||||||    
T  27921955 gttcgaaccccggcccctgcatataataatgcatgtccctaccaactgagctatgctcacggga 27921892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 52556711 - 52556770
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcac 72  Q
    ||||||||||||||| ||||||||||||||||||||   || ||||||||||||| ||||    
T  52556711 gttcgaaccccgacccctgcatataacaatgtatgttcctatcaactgagctatgttcac 52556770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 20610801 - 20610739
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcac 72  Q
    ||||||||||||||| || ||||||||||||||| |||||  | |||||||||||||| ||||    
T  20610801 ggagttcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgctcac 20610739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 49319448 - 49319392
Alignment:
Q  17 gaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacg 73  Q
    ||||||||||| |||||||||| |||| ||||| || |||||||||||||| |||||    
T  49319448 gaaccccgacccctgcatataataatgcatgtccatgccaactgagctatgctcacg 49319392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 12820441 - 12820504
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacggg 75  Q
    |||| |||||||||| ||||||||||||||| | ||||| | |||||||||||||| |||||||    
T  12820441 gttctaaccccgacccctgcatataacaatgcattgtctctgccaactgagctatgctcacggg 12820504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 25259506 - 25259456
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtat-gtctataccaactgagc 63  Q
    |||||||||||||| |||||||||||||||||| |||| | ||||||||||    
T  25259506 ttcgaaccccgacctctgcatataacaatgtatcgtctctgccaactgagc 25259456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 33359876 - 33359814
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||| |||||  |||||||||||||| ||||| ||  ||||||||||||| |||||||    
T  33359876 gttcgaacctcgacccttgcatataacaatgaatgtccatgtcaactgagctatgctcacggg 33359814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 41492534 - 41492596
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||||| || |||||||||| |||| |||||  | |||||||||||||| |||||||    
T  41492534 gttcgaaccccggcccctgcatataataatgcatgtccctgccaactgagctatgctcacggg 41492596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 33076589 - 33076528
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||||||||| |||||||||| |||| |||||    |||||||||||||| ||||||||    
T  33076589 gttcgaaccccgacccctgcatataataatgcatgtc--ccccaactgagctatgctcacggga 33076528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 35909199 - 35909262
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacggga 76  Q
    ||||||||||||||| |||||||||| |||||| ||||  |||||||||| ||||| ||||||||    
T  35909199 gttcgaaccccgacctctgcatataataatgtattgtc-ctaccaactgaactatgttcacggga 35909262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 39293579 - 39293519
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgg 74  Q
    |||||||||| ||| ||||||||||  ||| |||||  |||||||||||||||| ||||||    
T  39293579 ttcgaaccccaacccctgcatataattatgcatgtccctaccaactgagctatgctcacgg 39293519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 50657946 - 50657875
Alignment:
Q  6 gtttggagttcgaaccccgaccactgcatataacaatgtat-gtctataccaactgagctatgatcacgggac 77  Q
    ||||||||||||||||  |||| |||||||||| |||| || |||  |||||||||||||||| |||||||||    
T  50657946 gtttggagttcgaaccatgacccctgcatataataatgcattgtcc-taccaactgagctatgctcacgggac 50657875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 25064705 - 25064767
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||| ||| |||||||||| |||| ||||| ||||||||||| ||||| |||||||    
T  25064705 gttcgaaccccaacccctgcatataataatgcatgtccataccaactgaactatgctcacggg 25064767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 1488154 - 1488093
Alignment:
Q  6 gtttggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatg 67  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||| | |||| |||| ||||    
T  1488154 gtttggggttcgaaccccgacctctgcatataacaatgcatgtctctgccaattgagatatg 1488093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 14949053 - 14949110
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatg 67  Q
    |||||||||||||||||| |||||||||| ||||||||| | | ||||||||| ||||    
T  14949053 ggagttcgaaccccgacctctgcatataataatgtatgtttctgccaactgagttatg 14949110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 34524932 - 34524872
Alignment:
Q  15 tcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||||||||| || ||||||||||||||| |||||  | |||||||||||||| |||||||    
T  34524932 tcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggg 34524872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 18631537 - 18631467
Alignment:
Q  7 tttggagttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacgggac 77  Q
    ||||| ||||||| ||||||| ||||||||||||||||| ||||  |||||||||||||||| |||| ||||    
T  18631537 tttggggttcgaatcccgacccctgcatataacaatgtattgtc-ctaccaactgagctatgctcacaggac 18631467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 30833076 - 30833022
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatg 67  Q
    ||||||||||||||| ||||||||||||||| |||||  | |||||||| |||||    
T  30833076 gttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgaactatg 30833022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 8233148 - 8233081
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtat-gtctataccaactgagctatgatcacgggac 77  Q
    ||||||||||||| |||| ||| |||||| ||||||| |||  |||||||||||||||| |||||||||    
T  8233148 ggagttcgaaccctgacctctgtatataataatgtattgtcc-taccaactgagctatgctcacgggac 8233081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 10442943 - 10442883
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgg 74  Q
    |||||||||| ||| || ||||||||||||||| ||| || |||||||| |||| ||||||    
T  10442943 ttcgaaccccaacccctacatataacaatgtatatctctatcaactgagttatgctcacgg 10442883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 34070 - 34131
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||||| || ||||||||||||||| |||||  | |||||||||||||| |||||||    
T  34070 ttcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggg 34131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 24160564 - 24160624
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacg 73  Q
    ||||||||||||||| |||||||||||| || |||||| | ||||||||| |||| |||||    
T  24160564 gttcgaaccccgacccctgcatataacagtgcatgtctctgccaactgagttatgctcacg 24160624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 42271046 - 42271113
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacgggac 77  Q
    ||||||||||||||| || ||||||||||||||| | ||||  |||||||||||||||| |||||||||    
T  42271046 ggagttcgaaccccggcccctgcatataacaatgcattgtc-ctaccaactgagctatgctcacgggac 42271113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 2903751 - 2903704
Alignment:
Q  29 ctgcatataacaatgtatgtctataccaactgagctatgatcacggga 76  Q
    ||||||||||||||||||||| || |||||| ||||||| ||||||||    
T  2903751 ctgcatataacaatgtatgtccatgccaactaagctatgttcacggga 2903704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 16277984 - 16278051
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgggac 77  Q
    |||||||||| ||||||| |||||||||| |||| |||    |||||||||||||||| |||||||||    
T  16277984 ggagttcgaatcccgacccctgcatataataatgcatggtcctaccaactgagctatgctcacgggac 16278051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 31902238 - 31902305
Alignment:
Q  10 ggagttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacgggac 77  Q
    |||||||||||||||||| || ||||||| |||| ||||| |||| ||| || ||||| |||||||||    
T  31902238 ggagttcgaaccccgacccctacatataaaaatgcatgtccatacaaaccgaactatgttcacgggac 31902305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 4478405 - 4478463
Alignment:
Q  14 ttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcac 72  Q
    |||||||||||||| |||||||||| |||| ||||  |||| |||||||||||| ||||    
T  4478405 ttcgaaccccgacccctgcatataataatgcatgttcatactaactgagctatgctcac 4478463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 16874226 - 16874288
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    ||||||||| || || ||||||||||||||| |||||  | |||||||||||||| |||||||    
T  16874226 gttcgaacctcggcccctgcatataacaatgcatgtccctgccaactgagctatgctcacggg 16874288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 24130618 - 24130556
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatgatcacggg 75  Q
    |||| ||||||| || |||||||||||||||||||||  | ||||||||| |||| |||||||    
T  24130618 gttcaaaccccgtcccctgcatataacaatgtatgtccctgccaactgagttatgctcacggg 24130556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 33533262 - 33533208
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgtatgtctataccaactgagctatg 67  Q
    ||||||||||| |||||| |||||||||||| |||||| | ||||||||| ||||    
T  33533262 gttcgaaccccaaccactacatataacaatgcatgtctctgccaactgagttatg 33533208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 3973345 - 3973300
Alignment:
Q  29 ctgcatataacaatgtatgtctataccaactgagctatgatcacgg 74  Q
    ||||||||||||||| |||||  |||||||||||||||| ||||||    
T  3973345 ctgcatataacaatgcatgtccctaccaactgagctatgctcacgg 3973300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 3996531 - 3996576
Alignment:
Q  29 ctgcatataacaatgtatgtctataccaactgagctatgatcacgg 74  Q
    ||||||||||||||| |||||  |||||||||||||||| ||||||    
T  3996531 ctgcatataacaatgcatgtccctaccaactgagctatgctcacgg 3996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 43566832 - 43566896
Alignment:
Q  13 gttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacgggac 77  Q
    ||||||||||||||| |||||||||| |||| | ||||  |||||||||||||||| |||||||||    
T  43566832 gttcgaaccccgacccctgcatataataatgcattgtc-ctaccaactgagctatgttcacgggac 43566896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 43598860 - 43598796
Alignment:
Q  11 gagttcgaaccccgaccactgcatataacaatgta-tgtctataccaactgagctatgatcacgg 74  Q
    ||||||||||||||||| |||||||||| |||| | ||||| | |||||| | ||||||||||||    
T  43598860 gagttcgaaccccgacctctgcatataataatgcattgtctctgccaactaaactatgatcacgg 43598796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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