View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7797_low_3 (Length: 243)
Name: NF7797_low_3
Description: NF7797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7797_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45549094 - 45548870
Alignment:
| Q |
1 |
tccccggaccctaacaatttatttacacagataataatttcatgtatgttggtttacaggaagtggtgaaataaaagaaacaacagcacttgaggaatct |
100 |
Q |
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| T |
45549094 |
tccccggaccctaacaatttatttacacagataataatttcatgtatgttggtttacaggaagtggtgaagtaaaagaaacaacagcacttgaggaatct |
45548995 |
T |
|
| Q |
101 |
ctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccagccacctgtcgctgacagtactgaataccctccttcttctggaa |
200 |
Q |
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| T |
45548994 |
ctagagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatccagccacctgttgctgacagtactgaataccctccttcttctggaa |
45548895 |
T |
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| Q |
201 |
gccgtgatattgatcagtttgtgcc |
225 |
Q |
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| T |
45548894 |
gccgtgatattgatcagtttgtgcc |
45548870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 45545171 - 45545062
Alignment:
| Q |
48 |
gttggtttacaggaagtggtgaaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaacc |
147 |
Q |
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| T |
45545171 |
gttggcttacaggaagtgatgaaataaaagacataacaccactcgaggaatctcttgagagaatgaatgtgcatgacgagtcaaaacctaccacagaacc |
45545072 |
T |
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| Q |
148 |
aaaaatccag |
157 |
Q |
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| T |
45545071 |
aaaaatccag |
45545062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 45550358 - 45550233
Alignment:
| Q |
32 |
taataatttcatgtatgttggtttacaggaagtggtgaaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaa |
131 |
Q |
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| T |
45550358 |
taatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaa |
45550259 |
T |
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| Q |
132 |
aacctaccacagaaccaaaaatccag |
157 |
Q |
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| T |
45550258 |
aacctaccacagaaccaaaaatccag |
45550233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 45549926 - 45549805
Alignment:
| Q |
87 |
cacttgaggaatctctagagagaatgaatgtgcatg---atgagccaaaacctaccacagaaccaaaaatccagccacctgtcgctgacagtactgaata |
183 |
Q |
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| T |
45549926 |
cacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccatctgttactgac---actgaata |
45549830 |
T |
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| Q |
184 |
ccctccttcttctggaagccgtgat |
208 |
Q |
| |
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||||||| || |||||||| |||| |
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| T |
45549829 |
ccctcctgctgttggaagccatgat |
45549805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 45544281 - 45544156
Alignment:
| Q |
38 |
tttcatgtatgttggtttacaggaagtggtgaaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatg---atgagccaaaac |
134 |
Q |
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|||||||| |||||| |||||| |||| ||||| |||||| | ||| | |||||||||||||| ||||||||||||||||||| |||| ||||| | |
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| T |
45544281 |
tttcatgtgtgttggcttacagaaagtaatgaaacaaaagacattacaccgcttgaggaatctcttgagagaatgaatgtgcatgatgatgaaccaaatc |
45544182 |
T |
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| Q |
135 |
ctaccacagaaccaaaaatccagcca |
160 |
Q |
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||||||| ||| |||||||||||||| |
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| T |
45544181 |
ctaccactgaaacaaaaatccagcca |
45544156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 19671100 - 19671152
Alignment:
| Q |
104 |
gagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatcca |
156 |
Q |
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|||| ||||||||||||||||||||| ||||| || ||||||||||||||||| |
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| T |
19671100 |
gagataatgaatgtgcatgatgagcctaaaccaacaacagaaccaaaaatcca |
19671152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 36610142 - 36610184
Alignment:
| Q |
110 |
atgaatgtgcatgatgagccaaaacctaccacagaaccaaaaa |
152 |
Q |
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| T |
36610142 |
atgaatgtgcatgatgagcctaaacctacaacataaccaaaaa |
36610184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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