View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7797_low_4 (Length: 220)
Name: NF7797_low_4
Description: NF7797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7797_low_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 5502305 - 5502507
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5502305 |
tacactgctccaaaaccaccttctcccaacttgcttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
5502404 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaacagaacaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |
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|
| T |
5502405 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacagtttatgttgtttaatgttaagaaagtaacagaacaca |
5502504 |
T |
|
| Q |
201 |
tct |
203 |
Q |
| |
|
||| |
|
|
| T |
5502505 |
tct |
5502507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5489456 - 5489657
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5489456 |
tacactgctccaaaaccaccttctcccaacttgtttctgatagagaaattatttgttgcattagtgatggttgaaaaatcaaatattgttgcgaaatcac |
5489555 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaacagaacaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
5489556 |
catattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggttgaatgttaagaaagtaaaggaacaca |
5489655 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
|
|
| T |
5489656 |
tc |
5489657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5454267 - 5454468
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
5454267 |
tacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaaaaatcaaatattgtagccaattcac |
5454366 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaacagaacaca |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
5454367 |
catcttccttctccttcttgtgcttccagagaaataacttctttatataccctgaagtaacaatttaagtggtttaatgttaaaaaagtaaaggaacaca |
5454466 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
|
|
| T |
5454467 |
tc |
5454468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5445684 - 5445886
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
5445684 |
tacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaaaaatcaaagattgtagccaattcac |
5445783 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatg-ttaagaaagtaacagaacac |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||| |||||| |
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|
| T |
5445784 |
catcttccttctccttcttgtgcttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaaaagtaaaggaacac |
5445883 |
T |
|
| Q |
200 |
atc |
202 |
Q |
| |
|
||| |
|
|
| T |
5445884 |
atc |
5445886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 20343010 - 20343179
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
20343010 |
tacactggtccaaaaccaccttctcccaatttgtttctgatagagaagttatttgttgcattagtgatggttgaaaaatcaaatattgtggccaagtcat |
20343109 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagt |
170 |
Q |
| |
|
|| ||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
20343110 |
catcttcattctccttcttctgcttccagtgaaataacttttttatatggcctgaagtaacaattaaagt |
20343179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 5849682 - 5849492
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||||| |||||| | |||||||||| |||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
5849682 |
tacactggtccaaaaccaccttctcctaacttatttttattagagaagtgatttgttgcattagtgatggtggaaaaatcaaatattgtagccaagtcac |
5849583 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaa |
191 |
Q |
| |
|
|| | ||||||| || || ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
5849582 |
catctgccttctcttttttatgcttccgatgaaataacttttttatataacctgaagtaacaatttaagtggttcaatgttaacaaagtaa |
5849492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 5803255 - 5803066
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| ||| | ||||||| |||||||||||| || ||||||| ||||||||||||||||||||||| | |
|
|
| T |
5803255 |
tacactggtccaaaaccaccttctcctaacttatttgtatcagagaagttatttgttgcattattgatggtggaaaaatcaaatattgttgccaagttgg |
5803156 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaa |
191 |
Q |
| |
|
|| ||||||||||||| ||| |||||| | || ||||||||||||||||||| | || ||| |||||||||||||||||| ||||||| |
|
|
| T |
5803155 |
tatcttccttctccttcctgtccttccaacggaacaacttttttatataccctgga-caaaaatataagtggtttaatgttaacaaagtaa |
5803066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 5525169 - 5525344
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| || |||||| | |||||||||| | |||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
5525169 |
tacactggtccaaaaccaccttctcctaacttgtttctgttagagaagtgatttgttgcattggtgatggtcgaaaaatcaaatattgttgacaagtcac |
5525268 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagtaa |
191 |
Q |
| |
|
|| | |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
5525269 |
tatct------tccttcttgt---------gaaataactttttaatataccctgaagtaacaatttaagtggtttaatgtcaacaaagtaa |
5525344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 5484046 - 5484218
Alignment:
| Q |
9 |
tccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcacaatattcc |
108 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | |||||| | |||||||||| | |||||||| |||||||||||||| || ||||| ||| || |||| |
|
|
| T |
5484046 |
tccaaaaccaccttctcctaacttatttctattagagaagtgatttgttgcattggtgatggtggaaaaatcaaatatcgtagccaagtcatcatcttcc |
5484145 |
T |
|
| Q |
109 |
ttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatgttaagaaagta |
190 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||| |
|
|
| T |
5484146 |
ttctccttcttgt---------gaaataactttcttatataccctgaagtaataatttaagtggtttaatgtaaaaaaagta |
5484218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 5854841 - 5854755
Alignment:
| Q |
9 |
tccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaa |
95 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||| |||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
5854841 |
tccaaaaccaccttctcccagcttgtttctgacatagaagttatttgtcgcattagtgatggtcgaaaaatcaaatattgttgccaa |
5854755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 5828923 - 5828781
Alignment:
| Q |
9 |
tccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcacaatattcc |
108 |
Q |
| |
|
|||||| || |||||||| | ||||||||| ||| || | ||||||||| |||||||| ||||||||||||||||||||||||| ||| | || |
|
|
| T |
5828923 |
tccaaatccgccttctcctattttgtttttgttagaaaagtgatttgttgcgctagtgatgattgaaaaatcaaatattgttgccaagtcaaca---tct |
5828827 |
T |
|
| Q |
109 |
ttctccttcttgtgcttccagagaaataacttttttatataccctg |
154 |
Q |
| |
|
|||||||||||||| ||| | ||||||||| |||| |||||||||| |
|
|
| T |
5828826 |
ttctccttcttgtgtttcgatagaaataacattttcatataccctg |
5828781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 25810128 - 25809926
Alignment:
| Q |
1 |
tacactgctccaaaaccaccttctcccaacttgtttttgacagagaaattatttgttgcaatagtgatggttgaaaaatcaaatattgttgccaaatcac |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
25810128 |
tacactggtccaaaaccaccttctcccaacttgtttctgacagagaagttatttgttgcattagtgatggtcgaaaaatcaaagattgtagccaattcac |
25810029 |
T |
|
| Q |
101 |
aatattccttctccttcttgtgcttccagagaaataacttttttatataccctgaagtaacaatttaagtggtttaatg-ttaagaaagtaacagaacac |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||| |||||| |
|
|
| T |
25810028 |
catcttccttctccttcttgtgcttccagagaaataacttttttatatgccctgaagtaacaatttaagttgtttaatgtttaaaaaagtaaaggaacac |
25809929 |
T |
|
| Q |
200 |
atc |
202 |
Q |
| |
|
||| |
|
|
| T |
25809928 |
atc |
25809926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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