View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_high_12 (Length: 319)
Name: NF7798_high_12
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 32816809 - 32816493
Alignment:
| Q |
1 |
gaaatctttgactatattatgtgtcattcttattcaatctttgactatattatgtgataattaatgttggagagtacactttatattttttcatatttgc |
100 |
Q |
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| T |
32816809 |
gaaatctttgactatattatgtgtcattcttattcaatctttgactatattatgtgataattaatgttggagagtacactttatattttttcatatttgc |
32816710 |
T |
|
| Q |
101 |
ttataaaaagttataagtttatctctaatgctagttacaacgaaaatatgtgccacggatgaaatcacgatgtt-------------ccatgacccacct |
187 |
Q |
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| T |
32816709 |
ttataaaaggttataagtttatctctaatgctagttacaacgaaaatatatgccacggaagaaatcacaatgttgttttaacaacagccatgacccacct |
32816610 |
T |
|
| Q |
188 |
ttatatatcacacaacccatgtattccataagacatagcatcaaacggatggaaacagtttgggatgatttcgagacgtttttccttgggataaatagca |
287 |
Q |
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||||||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32816609 |
ttatatatcacacaatccatgtattccatcaggcatagcatcaaacggatgaaaacagtttgggatgatttcgagacgtttttcctcgggataaatagca |
32816510 |
T |
|
| Q |
288 |
tccctttaagtttatat |
304 |
Q |
| |
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||| ||||||||||||| |
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| T |
32816509 |
tccatttaagtttatat |
32816493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 176 - 292
Target Start/End: Complemental strand, 8439661 - 8439545
Alignment:
| Q |
176 |
catgacccacctttatatatcacacaacccatgtattccataagacatagcatcaaacggat-ggaaacagtttgggatgatttcgagacgtttttcctt |
274 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||| |||||||||| ||||||||||| |||||||||| || |
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| T |
8439661 |
catggcccacctttatatatcacacaacctatgtattccatcgg-catagcatccaacggattggaaacagttcgggatgatttcaagacgttttttctc |
8439563 |
T |
|
| Q |
275 |
gggataaatagcatccct |
292 |
Q |
| |
|
|||||||||||||||||| |
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| T |
8439562 |
gggataaatagcatccct |
8439545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 47400926 - 47400820
Alignment:
| Q |
186 |
ctttatatatcacacaacccatgtattccataagacatagcatcaaacggatggaaacagtttgggatgatttcgagacgtttttccttgggataaatag |
285 |
Q |
| |
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|||||| ||||||||||||||| ||||||| || ||||||||| ||||||| |||| ||| |||||||||| ||| |||||||| ||| ||||||| |
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| T |
47400926 |
ctttatgtatcacacaacccatatattccaccaggcatagcatccaacggatagaaattgttcgggatgatttatggacatttttcctcggggtaaatag |
47400827 |
T |
|
| Q |
286 |
catccct |
292 |
Q |
| |
|
|| |||| |
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|
| T |
47400826 |
cacccct |
47400820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 292
Target Start/End: Complemental strand, 16358979 - 16358868
Alignment:
| Q |
181 |
cccacctttatatatcacacaacccatgtattccataagacatagcatcaaacggatggaaacagtttgggatgatttcgagacgtttttccttgggata |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||| ||| ||||||||| | ||||||||| || |||||| |
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| T |
16358979 |
cccacctttatatatcacacaacccatgtattccatcaagcatagcatccaacggatagaaactgttcaggatgattttgggacgttttttctcgggata |
16358880 |
T |
|
| Q |
281 |
aatagcatccct |
292 |
Q |
| |
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|||||||||||| |
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| T |
16358879 |
aatagcatccct |
16358868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 30282173 - 30282070
Alignment:
| Q |
189 |
tatatatcacacaacccatgtattccataagacatagcatcaaacggatggaaacagtttgggatgatttcgagacgtttttccttgggataaatagcat |
288 |
Q |
| |
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||||||||||||||| |||||||||||| |||||||||||| ||||||| ||| | | |||||||||||||| || ||||| ||||||||||||||||| |
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| T |
30282173 |
tatatatcacacaactcatgtattccatgagacatagcatccaacggatagaacctggttgggatgatttcggaactttttttcttgggataaatagcat |
30282074 |
T |
|
| Q |
289 |
ccct |
292 |
Q |
| |
|
|||| |
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|
| T |
30282073 |
ccct |
30282070 |
T |
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