View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_high_18 (Length: 240)
Name: NF7798_high_18
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_high_18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 4653343 - 4653128
Alignment:
| Q |
25 |
gatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattgatcaggatttttcaaccc |
124 |
Q |
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| T |
4653343 |
gatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatctcgcaggatcaataacaaaatccattgatcaggaattttcaaccc |
4653244 |
T |
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| Q |
125 |
aatcatcnnnnnnnnttaagatcaccatagcgattgttgcgacgattatagtttccggcctcttgctagcaatgatcgtaggcaacacannnnnnnggct |
224 |
Q |
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| T |
4653243 |
aatcaccaaaaaaaattaagatcaccatagcgattgttgcgacgattgtagtttccagcctcttgctagcaatgatcgtaggcaacacatttttttggct |
4653144 |
T |
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| Q |
225 |
aaggaaaaagcttcat |
240 |
Q |
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| T |
4653143 |
aaggaaaaagcttcat |
4653128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 4666740 - 4666671
Alignment:
| Q |
37 |
aatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattg |
106 |
Q |
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| T |
4666740 |
aatggaatcgagattttaaaaataagtgacaaaaataacaatctcgcaggaccaatatcaaaatccattg |
4666671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 18926012 - 18926104
Alignment:
| Q |
17 |
aatatcgtgatgtcatattgaatggaatccagattttaaaagaaagtgactacaacgacaatcttgcaggatcaataacaaaatccattgatc |
109 |
Q |
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| T |
18926012 |
aataccgtaatgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataacaatctcgcaggatcaatatcaaaatccaatgatc |
18926104 |
T |
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