View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_high_3 (Length: 456)
Name: NF7798_high_3
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 38312321 - 38311890
Alignment:
| Q |
8 |
ttggtgttgacgaggctgatgttgtggccacaatggaagctaaagcagccacagtaatggtagtgtgctgctgagcattatgtattttgctttcctcttt |
107 |
Q |
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| T |
38312321 |
ttggtgttgacgaggctgctgttgtggccacaatggaagctaaagcagccacagtaatagtagtgtgctgctgagcattatgtattttgctttcctcttt |
38312222 |
T |
|
| Q |
108 |
ctttcaaccatcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38312221 |
ctttcaaccatcttcttacagttttaggtcctgaacaagttgtgctgctgccaacagcagcagttgctcttccaccattagataatgggtgaatggaatt |
38312122 |
T |
|
| Q |
208 |
gttttctcaagaaatatatagtgtgtgacttattagaaaaagctaatagagttgctcgtagcttagtaaaaactgattatatatgttgacaacatcgtca |
307 |
Q |
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| T |
38312121 |
gttttctcaagaaatatatagtgtgcgacttattagaaaaagctaatagagttgctcgtagcttagtaaaaattgattatatatgttgacaacatcgtca |
38312022 |
T |
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| Q |
308 |
aattgatctgaatgacaaattggtggactccctgatccggctaatgcaccaccatgattcaaaggctcgctgctgagagatattctatctgatgttaatg |
407 |
Q |
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| T |
38312021 |
aattgatctgaatgacaaattggtggactccctgatccggctaatgcaccaccatgattcaaaggctcgctgctgagagatattctatctgatgttaatg |
38311922 |
T |
|
| Q |
408 |
gcgacacatcctgttgcatatgcaaaacaaac |
439 |
Q |
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| T |
38311921 |
gcgacacatcctgttgcatatgcaaaacaaac |
38311890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 38268420 - 38268316
Alignment:
| Q |
107 |
tctttcaaccatcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaat |
206 |
Q |
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||||||||||| |||| ||||||||||||||||||||||| ||||| | |||||||| | ||| || ||||||||||||| |||||||||||||||||| |
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| T |
38268420 |
tctttcaaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaacaccggcacttgctcttccaccattgaataatgggtgaatggaat |
38268321 |
T |
|
| Q |
207 |
tgttt |
211 |
Q |
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||||| |
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| T |
38268320 |
tgttt |
38268316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 428
Target Start/End: Complemental strand, 38268246 - 38268072
Alignment:
| Q |
251 |
taatagagttgctcgtagcttagtaaaaactgattatatatgttgacaacatcgtcaaattgatctgaatgacaaattggtggactccctgatccggcta |
350 |
Q |
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||||||||||| || |||| ||||||||| | ||| || | ||||||||||||||||||| |||||||||| |||| |||||| ||| ||| | || |
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| T |
38268246 |
taatagagttgttcatagcgtagtaaaaatttattgtaaaccttgacaacatcgtcaaattcatctgaatgagaaat---tggactgtctgttccagtta |
38268150 |
T |
|
| Q |
351 |
atgcaccaccatgattcaaaggctcgctgctgagagatattctatctgatgttaatggcgacacatcctgttgcatat |
428 |
Q |
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||| || ||| ||||||||| ||||||||| |||||| |||| |||||||||| || ||||| ||||||| ||||| |
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| T |
38268149 |
atgaactgccaccattcaaaggttcgctgctgtgagataatctacctgatgttaacggagacacttcctgttacatat |
38268072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 38268493 - 38268434
Alignment:
| Q |
51 |
agcagccacagtaatggtagtgtgctgctgagcattatgtattttgctttcctctttctt |
110 |
Q |
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||||||||||||||| |||| |||| |||||||||| ||| || ||||||| |||||||| |
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| T |
38268493 |
agcagccacagtaatagtagcgtgcagctgagcattttgtgttctgctttcttctttctt |
38268434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 31707668 - 31707711
Alignment:
| Q |
103 |
tctttctttcaaccatcttcttacagttttaggtcctgaacaag |
146 |
Q |
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| T |
31707668 |
tctttctttcaaccatcttcctactgttttaggtcctgaacaag |
31707711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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