View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7798_high_4 (Length: 433)

Name: NF7798_high_4
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7798_high_4
NF7798_high_4
[»] chr6 (2 HSPs)
chr6 (17-409)||(4183683-4184078)
chr6 (18-409)||(4744523-4744914)
[»] chr1 (8 HSPs)
chr1 (40-196)||(51382140-51382296)
chr1 (33-237)||(51857761-51857965)
chr1 (38-154)||(51763628-51763744)
chr1 (33-196)||(51781992-51782155)
chr1 (45-176)||(51221896-51222027)
chr1 (33-196)||(51831605-51831768)
chr1 (33-160)||(51828985-51829113)
chr1 (66-146)||(25611721-25611801)
[»] scaffold0015 (1 HSPs)
scaffold0015 (99-187)||(41141-41229)
[»] chr3 (3 HSPs)
chr3 (75-146)||(955600-955668)
chr3 (101-145)||(1941330-1941374)
chr3 (105-142)||(803982-804019)
[»] chr7 (1 HSPs)
chr7 (67-160)||(1421900-1421993)


Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 4183683 - 4184078
Alignment:
Q  17 agcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183683 agcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccag 4183782  T
Q  117 gacttgcaaacgcaacggagttgaaggaggggtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgg 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4183783 gacttgcaaacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttagtgg 4183882  T
Q  217 gaggcagtggtgttagggttctggttgaggttcctcctcgtttgcgacctgtcatcgtcgtcatatcaatggcggctggctgagactgacggtactacaa 316  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183883 gaggcagttgtgttagggttctggttgaggttcctcctcgtttgcgacctgtcatcgtcgtcatatcaatggcggctggctgagactgacggtactacaa 4183982  T
Q  317 gtactttatccttaggaaacacagcaaaaactagtgtactctagg---ttattatagaaagattaggtcaaattttgagtagttttggcaaaaaca 409  Q
    ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183983 gtactttatccttaggaaacatagcaaaaactagtgtactctaggttattattatagaaagattaggtcaaattttgagtagttttggcaaaaaca 4184078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 4744523 - 4744914
Alignment:
Q  18 gcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccagg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4744523 gcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattc-agg 4744621  T
Q  118 acttgcaaacgcaacggagttgaaggaggg-gtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgg 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4744622 acttgcaaacgcaacggagttgaaggagggtgtttcacagggagacagcagaggatttctgccacaagatcgaatggaagtaacggaggagagttagtgg 4744721  T
Q  217 gaggcagtggtgttagggttctggttgaggttcctcctcgtttgcgacctgtcatcgtcgtcatatcaatggcggctggctgagactgacggtactacaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4744722 gaggcagtggtgttagggttctggttgaggttcctcctcgtttgcgacctgtcatcgtcgtcatatcaatggcggctggctgagactgacggtactacaa 4744821  T
Q  317 gtactttatccttaggaaacacagcaaaaactagtgtactctaggttattatagaaagattaggtcaaattttgagtagttttggcaaaaaca 409  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4744822 gtactttatccttaggaaacatagcaaaaactagtgtactctaggttattatagaaagattaggtcaaattttgagtagttttggcaaaaaca 4744914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 51382140 - 51382296
Alignment:
Q  40 ggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttg 139  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||    
T  51382140 ggcggtcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgcagacgcaacggagttg 51382239  T
Q  140 aaggaggggtttcacagggagacagcataggatttctgccacaagatcgaatggaag 196  Q
    ||||||| ||||||| |||||   ||| |||||||||||||| |||||||| |||||    
T  51382240 aaggaggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaag 51382296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 237
Target Start/End: Complemental strand, 51857965 - 51857761
Alignment:
Q  33 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 132  Q
    |||| |||||||||| |||||||||| ||||| |||||||| ||| | | ||||| ||||||||| ||||||||||||||||| |||||||| | |||||    
T  51857965 aggtggtggcggtcgaggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttgcagatgcaac 51857866  T
Q  133 ggagttgaaggaggggtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgggaggcagtggtgttag 232  Q
    |||||||||||||   |||||| |||||   ||| || ||||||| ||| |||||||| | ||| || ||| |||| ||||| |||||| |||||||| |    
T  51857865 ggagttgaaggagatttttcacggggagctggcacagaatttctgtcacgagatcgaacgaaagaaatggaagagaattggtaggaggcggtggtgtttg 51857766  T
Q  233 ggttc 237  Q
    |||||    
T  51857765 ggttc 51857761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 51763628 - 51763744
Alignment:
Q  38 gtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagt 137  Q
    ||||||||| |||||||| || |  || |||||||| ||||||| |||||  ||||||||  |||||||||||||||| |||||||| ||||||| ||||    
T  51763628 gtggcggtcatggttggaagttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagt 51763727  T
Q  138 tgaaggaggggtttcac 154  Q
    ||||||||  |||||||    
T  51763728 tgaaggagatgtttcac 51763744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 51782155 - 51781992
Alignment:
Q  33 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 132  Q
    |||| |||||| |||||||| ||||| ||||| |||| ||| || || |||||||| |||||||||||||||||||||||||| ||||| || || |  |    
T  51782155 aggtggtggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttacagacacggc 51782056  T
Q  133 ggagttgaaggaggggtttcacagggagacag-cataggatttctgccacaagatcgaatggaag 196  Q
    |||||| || |||  ||||||| ||||| ||| || ||||||||||| || |||||||| |||||    
T  51782055 ggagtttaatgagatgtttcacggggag-cagacacaggatttctgcaaccagatcgaacggaag 51781992  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 51221896 - 51222027
Alignment:
Q  45 tcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaagga 144  Q
    ||||||||| |||| ||||| ||||| || |||||||| || ||  ||||||| ||||||||||||||||| |||||||| | ||| |||||||||| ||    
T  51221896 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatga 51221995  T
Q  145 ggggtttcacagggagacagcataggatttct 176  Q
    || ||||||| || || | ||| |||||||||    
T  51221996 ggtgtttcacgggcagccggcacaggatttct 51222027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 51831768 - 51831605
Alignment:
Q  33 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 132  Q
    |||| |||||||| | |||||||||| |||||  ||||||| ||| ||| ||| |||||||| |  ||||||||||| ||||| |||||||| || ||||    
T  51831768 aggtggtggcggtggaggttggaggttgacaactgaaggtgcttcctggtgaaattggaatcttcagagataagagagttccatgacttgcagacacaac 51831669  T
Q  133 ggagttgaaggaggggtttcacagggagacagcataggatttctgccacaagatcgaatggaag 196  Q
    |||||||||||||   |||||| ||||| | ||| |||||| || |||| ||||| || |||||    
T  51831668 ggagttgaaggagaaatttcactgggagccggcacaggattactaccacgagatcaaacggaag 51831605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 51829113 - 51828985
Alignment:
Q  33 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggactt-gcaaacgcaa 131  Q
    |||| |||||||| ||||| | |||| || ||  ||||||| ||| |||| || |||||||| |  | ||||||||||||||| ||||| ||| || |||    
T  51829113 aggtggtggcggttgtggtcgtaggttgagaagtgaaggtgtttcctggcaaaattggaatcctcagggataagagaattccatgactttgcagacacaa 51829014  T
Q  132 cggagttgaaggaggggtttcacagggag 160  Q
    |||||||||| |||| ||||||| |||||    
T  51829013 cggagttgaatgaggtgtttcacggggag 51828985  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 25611721 - 25611801
Alignment:
Q  66 cgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggagg 146  Q
    |||||||| |||||| | || |||| |||||  || || ||||||||||| |||||||| ||||||| || ||||||||||    
T  25611721 cgaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggagg 25611801  T

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Target: scaffold0015 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 41141 - 41229
Alignment:
Q  99 gagataagagaattccaggacttgcaaacgcaacggagttgaaggaggggtttcacagggagacagcataggatttctgccacaagatc 187  Q
    ||||| ||||||||||| |||||||| |||||||||| ||| ||||||  |||||||||||| |  ||||||||||| |||||||||||    
T  41141 gagattagagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatc 41229  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 955668 - 955600
Alignment:
Q  75 ttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggagg 146  Q
    ||||||||||| |||||||||   ||||||||||||||||| ||||| |||||||| || ||||||||||||    
T  955668 ttcttggcgaagttggaatca---gagataagagaattccaagacttacaaacgcatcgaagttgaaggagg 955600  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 1941330 - 1941374
Alignment:
Q  101 gataagagaattccaggacttgcaaacgcaacggagttgaaggag 145  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||    
T  1941330 gataagagaattccacgacttgcaaacgcaccggaattgaaggag 1941374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 803982 - 804019
Alignment:
Q  105 agagaattccaggacttgcaaacgcaacggagttgaag 142  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  803982 agagaattccatgacttgcaaacgcatcggagttgaag 804019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 1421900 - 1421993
Alignment:
Q  67 gaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggaggggtttcacagggag 160  Q
    ||||||| || ||||||||||||| |||||  ||||| ||| ||||||| ||||| || |||||||||| ||| ||||||  |||||| |||||    
T  1421900 gaaggtgttttttggcgaatttgggatcatttgagattagaaaattccacgacttacagacgcaacggaattgtaggaggaatttcactgggag 1421993  T

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