View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_high_5 (Length: 424)
Name: NF7798_high_5
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Original strand, 46281076 - 46281437
Alignment:
| Q |
11 |
gagaagaaagaggagataaatataaataataaatatgaaataaggtaaagaatcaaacaagagtgatttaatgtttatagacaaagatcatatggtttgc |
110 |
Q |
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| T |
46281076 |
gagaagaaagaggagataaatataaataataaatatgaaataaggtaaagaatcaaacaagagtgatttaatgtttatagacaaggatcatatggtttgc |
46281175 |
T |
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| Q |
111 |
ttttgagcaaaaagtttataacctctttagggaagataaaatgaaagaaagtgagtggatagaaaaagttatagtttgtgtgtgccacttcacgtggtgg |
210 |
Q |
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| T |
46281176 |
ttttgagcaaaaagtttataacctctttagggaagataaaatgaaagaaagtgagtggatagaaaaagttatagtttgtgtgtgccacttcacgtggtgg |
46281275 |
T |
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| Q |
211 |
gcacagcttgagaattgacagaaaactaaaaccctcttcaatcgatcacttcccttacacacccacacctttagtttcctactactatatatgtatgtat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46281276 |
gcacagcttgagaattgacagaaaactaaaaccctcttca----atcacttcccttacacacccacacctttagtttcctactactatatatgtatgtat |
46281371 |
T |
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| Q |
311 |
accaagcttataaccattgaccttgtatagaatagaagtatggggtgtgatgctcctaaactgaga |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46281372 |
accaagcttataaccattgaccttgtatagaatagaagtatggggtgtgatgctccttaactgaga |
46281437 |
T |
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