View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_high_6 (Length: 422)
Name: NF7798_high_6
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 11902633 - 11903027
Alignment:
| Q |
18 |
aaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataa |
117 |
Q |
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| T |
11902633 |
aaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataa |
11902732 |
T |
|
| Q |
118 |
tctcttggaaacaatgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902733 |
tctcttggaaacaatgaacaatatgcaaaacataacttgtgaagcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctcca |
11902832 |
T |
|
| Q |
218 |
cttctgctatttggtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccaca |
317 |
Q |
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| T |
11902833 |
cttctgctatttggtctgctgccaaaattgaaacaccaccagcactttggttcttcatcaacattgctacggtcacaatcgcaagagggactccaccaca |
11902932 |
T |
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| Q |
318 |
atccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaagttggcccacgaatttgttggaataacaattgagattcat |
412 |
Q |
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| T |
11902933 |
atccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaggttgaagtttgcccacgaatttgttggaataacaattgagattcat |
11903027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 11859891 - 11859754
Alignment:
| Q |
18 |
aaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataa |
117 |
Q |
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| T |
11859891 |
aaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagttgaatcaatctctctgcatcaatcaaataa |
11859792 |
T |
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| Q |
118 |
tctcttggaaacaatgaacaatatgcaaaacataactt |
155 |
Q |
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||| ||||||||||||||||||||| || |||||||| |
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| T |
11859791 |
tcttctggaaacaatgaacaatatgcgaagcataactt |
11859754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 11827732 - 11827622
Alignment:
| Q |
42 |
aaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatat |
141 |
Q |
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| T |
11827732 |
aaattgttgttctggattgataagaaacccttcaccagtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatat |
11827633 |
T |
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| Q |
142 |
gcaaaacataa |
152 |
Q |
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||||| ||||| |
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| T |
11827632 |
gcaaagcataa |
11827622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 12038604 - 12038513
Alignment:
| Q |
64 |
agaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
155 |
Q |
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|||||||||||||| ||||| |||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| || ||||| |
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| T |
12038604 |
agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaactt |
12038513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 11731517 - 11731348
Alignment:
| Q |
61 |
gtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataacttgtgaa |
160 |
Q |
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|||| ||||||||||||| ||| |||| |||||||||||| ||||||||||||| || | |||||||||||||||| ||||||| || || || | | |
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| T |
11731517 |
gtgataaatccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagcacaatttataac |
11731418 |
T |
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| Q |
161 |
gcattggaagatccttgtaatacataaacttgagctcttgtagaaacttcctctccacttctgctatttg |
230 |
Q |
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| T |
11731417 |
atgtgggaagatcctcgtaatatctaaacttgagctcgtttagaaactccctctccacgtcttctatttg |
11731348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 11731301 - 11731226
Alignment:
| Q |
295 |
atcgcaagagggactccaccacaatccttcacgagttcccattcgatgttgtcttgtttgttgttggttgaagttgaag |
373 |
Q |
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||||||||||| ||||| |||||||||||||| | ||| || || ||||||||||||||||||||||||||||||| |
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| T |
11731301 |
atcgcaagaggcactcccccacaatccttcacaatctccaatccg---ttgtcttgtttgttgttggttgaagttgaag |
11731226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 11974974 - 11975064
Alignment:
| Q |
65 |
gaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
155 |
Q |
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|||||||||| || ||| |||| | |||||||||||| |||||||||||| |||| ||||||||||||||| || ||||||| ||||| |
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| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaactt |
11975064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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