View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_high_7 (Length: 398)
Name: NF7798_high_7
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 52987485 - 52987881
Alignment:
| Q |
17 |
aaaagtgtgattaggtctagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaannnnnnnnnnnnnngacatccttagctccaatc |
116 |
Q |
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| T |
52987485 |
aaaagtgtgattaggcttagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaattttttatttttttgacatccttagctccaatc |
52987584 |
T |
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| Q |
117 |
tnnnnnnnnnnnnnnn-ggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgtatcaagatc |
215 |
Q |
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| T |
52987585 |
taaaaaaaaaaaaaaaaggcaagatgcactaaacaaagaaatgtttgcataaaaaactatcatctattcatcccacaattctggtccctgtatcaagatc |
52987684 |
T |
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| Q |
216 |
aagatgttgtagcctattaaatataaccaattgcaattatttatttaaagtt--------------ttccatatggtaaacattaatgtgcataaacaag |
301 |
Q |
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| T |
52987685 |
aagatgttgtagcctattaaatataaccaattgcaattatttatttaaagttttccatatttgttattccatatggtaaacattaatttgcataaacaag |
52987784 |
T |
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| Q |
302 |
attgctaactttgttgcttatgctgcctggagtcagttacacctattctgtaacaatttctgataaacctacaaaactaccagcccctgaatgtcca |
398 |
Q |
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| T |
52987785 |
attgctaactttgttgcttatgctgcctggagtcagttacacctattctgtaacaatttctgataaacctacgaaactaccagcccctgaatgtcca |
52987881 |
T |
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