View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_high_8 (Length: 392)
Name: NF7798_high_8
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 23983360 - 23982976
Alignment:
| Q |
1 |
ctatcaaaaagaatttcacaatgtctgataccaaataatacaaagtaactatgt-------tagtgcacttacttttatcaccattttccagaattggct |
93 |
Q |
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| T |
23983360 |
ctatcaaaaagaatttcacaatgtttgataccaaataatacaatgtaactatgtaaggtgttagtgcgcttacttttatcaccgttttccagagttggct |
23983261 |
T |
|
| Q |
94 |
gcaaaatagaaaaatcagaagtaagaaccagagtattgagttttgaggtttgaaataggcatacactttagattgaaaatgtgtctagagtacaactatg |
193 |
Q |
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| T |
23983260 |
gcaagaaagaaaaatcagaagtaagtatcagagtattgaattttgaggtttgaaataggcatacactttagattgaaaatgtgtctagagtacaactatg |
23983161 |
T |
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| Q |
194 |
cttgagaccggtcgagactgacatatatatgtacaaggaataaattatacataacgagtaaatagaaaaagagttgtctacccaatttgtgtgcacataa |
293 |
Q |
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| T |
23983160 |
cttgagaccggtcgagactgacatatatatgtacaaggaataaattatacataacgagtaaatagaaaaagagttgtctacccaatttgtgtgcacataa |
23983061 |
T |
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| Q |
294 |
agaatgttaacatcagagttattaatcaaaacaaaataaatgtctgatatgtaactgtaatgggagctgccaaagatgtaacaat |
378 |
Q |
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| T |
23983060 |
agaatgttaacatcagtgttattaatcaaaacaaaataaatgtctgatatgtaactgtaatgggagctgccatagatgtaacaat |
23982976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 23990045 - 23989869
Alignment:
| Q |
4 |
tcaaaaagaatttcacaatgtctgataccaaataatacaaagtaactatgt-------tagtgcacttacttttatcaccattttccagaattggctgca |
96 |
Q |
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| T |
23990045 |
tcaaaaagaatttcacaatgtttgataccaaataatacaatgtaactatgtaaggtgttagtgcacttacttttatcaccgttttccagagttggctgca |
23989946 |
T |
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| Q |
97 |
aaatagaaaaatcagaagtaagaaccagagtattgagttttgaggtttgaaataggcatacactttagattgaaaatgtgt |
177 |
Q |
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| T |
23989945 |
aa--agaaaaatcagaagtaagaatc--agtattgaattttgaggttttaaataggcatatactttagattgaacatgtgt |
23989869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 23966303 - 23966187
Alignment:
| Q |
12 |
aatttcacaatgtctgataccaaataatacaaagtaa-ctatgt-------tagtgcacttacttttatcaccattttccagaattggctgcaaaataga |
103 |
Q |
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| T |
23966303 |
aatttcacaatgtttgataccaaataatacaatgtaaactatgtaaggtgttagtgcacttacttttatcaccattttccagaattggctgcaaaataga |
23966204 |
T |
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| Q |
104 |
aaaatcagaagtaagaa |
120 |
Q |
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| T |
23966203 |
aaaatcagaagtaagaa |
23966187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 374
Target Start/End: Complemental strand, 23965818 - 23965675
Alignment:
| Q |
234 |
taaattatacataacgagtaaatagaaaaagagttgtctacccaatttgtgtgcacataaagaatgtt--aacatcagagttatt--aatcaaaacaaaa |
329 |
Q |
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||||||||| ||| ||||||||||||||| ||| ||||| |||||||||||||| |||| ||||||| |||||||||||||| ||||||||||| | |
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| T |
23965818 |
taaattataagtaatgagtaaatagaaaaa-agtagtctatccaatttgtgtgcatataatgaatgttcaaacatcagagttatataaatcaaaacaata |
23965720 |
T |
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| Q |
330 |
taaatgtctgatatgtaactgtaatgggagctgccaaagatgtaa |
374 |
Q |
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| T |
23965719 |
tgaatgtctgatacgtaactgcaatgggttttgccaaagatgtaa |
23965675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 23989729 - 23989678
Alignment:
| Q |
245 |
taacgagtaaatagaaaaagagttgtctacccaatttgtgtgcacataaaga |
296 |
Q |
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|||| ||||||||||||||||| ||| ||||||||||||||||| ||||||| |
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| T |
23989729 |
taactagtaaatagaaaaagagctgtttacccaatttgtgtgcatataaaga |
23989678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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