View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_low_1 (Length: 861)
Name: NF7798_low_1
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 562
Target Start/End: Complemental strand, 32626945 - 32626398
Alignment:
| Q |
19 |
atgtggcacaatgcatgagagctttggctgaacctttgctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgctataaaaaatattt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32626945 |
atgtggcacaatgcatgagagctttggctgaacctttgctagtcagtcattttggtgaaggtgttgttaaagagatttttaaccgctataaaaaatattt |
32626846 |
T |
|
| Q |
119 |
aaccgatcgaaactctaaagagagaactaggttcatcaatatcaccatattattgactaaaagatcatgagcaagaacatttttggttaaggtttatatt |
218 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32626845 |
aaccgatcgaaactctaaagggagaactaagttcatcaatatcaccatattattggctaaaagatcatgagcaagaacatttttggtt------------ |
32626758 |
T |
|
| Q |
219 |
ttggttcaaaatattcaaagttataaggct----------------------agtatttagttagaaaatgttatgatggnnnnnnntataggaataaaa |
296 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32626757 |
------caaaatattcaaagttataaggctagttagcattatcttcctagctagtatttagttagaaaatgttatgatgaaaaaaaatataggaataaaa |
32626664 |
T |
|
| Q |
297 |
acttagatgtcactactcactagttgtgatatatgctcttgattgtaagataaaattatgtatccctagtgcagaaattgaattttaagctagtttttaa |
396 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
32626663 |
acgtagatgtcactactcactagttgtgatatatgctcttgattgtaagataaaattatgtatccctagtgtagaaattgaattttaagttagtttttaa |
32626564 |
T |
|
| Q |
397 |
atccctattaagccgattttgaactaacttaaagacattttgtcttagtatacaatttatgacaatttgaaaatcgtcttcagattaaatgtttgaatcc |
496 |
Q |
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|||||| ||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
32626563 |
atcccttttaagtcggttttgaactaacttaaagacgttttgtcttagtatacggtttatgacaatttaaaaatcatcttcagattaaatgtttgaatcc |
32626464 |
T |
|
| Q |
497 |
agttgaaattaaatattcattttaaacatatcattttgtgtctcatggatacacacggatttttgt |
562 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32626463 |
agttgagattaaatattcattttaaacatatcattttgtgtcacatggatacacacggatttttgt |
32626398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 674 - 846
Target Start/End: Complemental strand, 32626325 - 32626151
Alignment:
| Q |
674 |
cttttactcatcaacatcaatcaccttatcttgttgtgattcaaagataaagttcacgactaagaaaaagatctacattatataataaatatgaaacaaa |
773 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32626325 |
cttttattcatcaacatcaatcaccttatcttgttgtgattcaaagataaagttcacgcctaagaaaaagatctacattatataataaatatgaaacaaa |
32626226 |
T |
|
| Q |
774 |
gtaaaacatatttatatgatac-tttctgctttggcaatccatccaaaagggtttacat-gctctatagcttcat |
846 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
32626225 |
gtaaaacatatttatatgatacttttctgctttggcaatccatccaagagggtttacatagctctatagtttcat |
32626151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 7292180 - 7292132
Alignment:
| Q |
30 |
tgcatgagagctttggctgaacctttgctagttagtcattttggtgaag |
78 |
Q |
| |
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||||| |||||| ||| ||||||||||||||||||||| |||||||||| |
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| T |
7292180 |
tgcattagagctgtggttgaacctttgctagttagtcactttggtgaag |
7292132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 32702728 - 32702662
Alignment:
| Q |
19 |
atgtggcacaatgcatgagagctttggctgaacctttgcta---gttagtcattttggtgaaggtgt |
82 |
Q |
| |
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|||||||||||||||| || ||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
32702728 |
atgtggcacaatgcataagggctgtggctgaacctttgttgttggttagtcattttggtgaaggtgt |
32702662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 27735947 - 27735763
Alignment:
| Q |
22 |
tggcacaatgcatgagagctttggctgaacctttgctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgctataaaaaatatttaac |
121 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||| |||| |||||| |
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| T |
27735947 |
tggcacaatgcattagggctgtggctgaacctttgctagttagtcactttggtgaaggtgtcattacagagatttttgaccgctatagaaaaattttaac |
27735848 |
T |
|
| Q |
122 |
cgatcgaaactctaaagagagaactaggttcatcaatatcaccatattattgactaaaagatcatgagcaagaacatttttggtt |
206 |
Q |
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||||| | || ||||||| ||||| ||||| |||| | | |||||| ||||| | || | | ||||||| ||||||||||||| |
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| T |
27735847 |
tgatcggatgtccaaagagaaaactaagttcaccaatcttagcatattgttgacaagaaaaccttgagcaaaaacatttttggtt |
27735763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 5810650 - 5810560
Alignment:
| Q |
19 |
atgtggcacaatgcatgagagctttggctgaacctttgctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgctataa |
109 |
Q |
| |
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|||||||||||||||| || ||| |||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| |||||||| |
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| T |
5810650 |
atgtggcacaatgcataagggctgtggctgaacctttgctagctagtcactttggtgaaggtgtcattaaagagatttttaatcgctataa |
5810560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 21941752 - 21941687
Alignment:
| Q |
47 |
tgaacctttgctagttagtcattttggtgaaggtgttgttaaagagatttttaaccgctataaaaa |
112 |
Q |
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|||||||||||| |||||||||||||||||||||| | ||||| | ||||||||||||||||| |
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| T |
21941752 |
tgaacctttgcttattagtcattttggtgaaggtgtgactgaagaggtatttaaccgctataaaaa |
21941687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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