View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7798_low_11 (Length: 367)

Name: NF7798_low_11
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7798_low_11
NF7798_low_11
[»] chr8 (12 HSPs)
chr8 (1-349)||(30909296-30909644)
chr8 (94-192)||(40328800-40328900)
chr8 (94-192)||(3303718-3303817)
chr8 (94-192)||(4731679-4731778)
chr8 (94-192)||(40221766-40221865)
chr8 (94-162)||(19491777-19491846)
chr8 (94-192)||(30143361-30143460)
chr8 (94-162)||(1292541-1292610)
chr8 (94-162)||(4162518-4162587)
chr8 (95-162)||(3772214-3772282)
chr8 (94-192)||(30291627-30291727)
chr8 (94-189)||(42435042-42435138)
[»] chr4 (25 HSPs)
chr4 (95-162)||(32091500-32091568)
chr4 (94-192)||(24969133-24969232)
chr4 (94-162)||(34788853-34788922)
chr4 (94-192)||(8665429-8665528)
chr4 (94-192)||(12073413-12073512)
chr4 (94-192)||(40632466-40632565)
chr4 (118-192)||(48893686-48893761)
chr4 (96-192)||(26175684-26175781)
chr4 (94-162)||(44570444-44570513)
chr4 (94-192)||(46703521-46703621)
chr4 (93-192)||(27417013-27417113)
chr4 (151-215)||(40417864-40417928)
chr4 (135-218)||(40975031-40975115)
chr4 (94-189)||(46147442-46147538)
chr4 (94-192)||(26364257-26364356)
chr4 (75-192)||(34112819-34112938)
chr4 (90-153)||(39662341-39662404)
chr4 (118-192)||(50673895-50673970)
chr4 (95-158)||(51904491-51904554)
chr4 (94-192)||(52467402-52467501)
chr4 (94-192)||(47038459-47038557)
chr4 (94-162)||(44967908-44967977)
chr4 (94-192)||(6542227-6542327)
chr4 (121-192)||(6656004-6656076)
chr4 (90-150)||(22628986-22629046)
[»] chr3 (15 HSPs)
chr3 (94-192)||(46860495-46860594)
chr3 (94-192)||(22835050-22835149)
chr3 (94-192)||(32744484-32744582)
chr3 (94-192)||(34491233-34491332)
chr3 (92-192)||(29810887-29810988)
chr3 (94-193)||(7764485-7764585)
chr3 (94-192)||(32891124-32891224)
chr3 (94-192)||(760868-760967)
chr3 (94-192)||(7762286-7762385)
chr3 (94-192)||(9581303-9581402)
chr3 (94-192)||(30236146-30236245)
chr3 (94-192)||(44700526-44700625)
chr3 (94-192)||(51398835-51398934)
chr3 (94-191)||(39153410-39153508)
chr3 (94-192)||(9666514-9666614)
[»] chr2 (11 HSPs)
chr2 (94-192)||(11151639-11151738)
chr2 (94-193)||(28523071-28523170)
chr2 (94-192)||(723792-723891)
chr2 (118-192)||(36773607-36773682)
chr2 (94-192)||(42362373-42362472)
chr2 (94-192)||(45726950-45727049)
chr2 (94-162)||(42261564-42261633)
chr2 (94-192)||(11690522-11690621)
chr2 (94-192)||(36318057-36318156)
chr2 (94-192)||(36988124-36988223)
chr2 (119-192)||(7815321-7815395)
[»] chr1 (17 HSPs)
chr1 (94-192)||(8550835-8550934)
chr1 (94-192)||(7482278-7482378)
chr1 (94-192)||(13547137-13547236)
chr1 (119-192)||(193657-193731)
chr1 (100-192)||(6808479-6808573)
chr1 (94-192)||(37168318-37168418)
chr1 (94-162)||(41360935-41361004)
chr1 (94-192)||(37559916-37560016)
chr1 (94-192)||(196956-197055)
chr1 (94-192)||(28265602-28265701)
chr1 (94-192)||(44455181-44455280)
chr1 (98-192)||(46064943-46065038)
chr1 (94-192)||(47255388-47255487)
chr1 (95-192)||(834215-834313)
chr1 (97-162)||(40122276-40122342)
chr1 (94-190)||(23555315-23555412)
chr1 (94-192)||(47115192-47115292)
[»] chr7 (14 HSPs)
chr7 (94-158)||(43363556-43363621)
chr7 (94-192)||(23565109-23565209)
chr7 (94-192)||(8359364-8359464)
chr7 (94-189)||(29608758-29608854)
chr7 (94-192)||(2390303-2390402)
chr7 (94-192)||(6431992-6432091)
chr7 (94-192)||(8153363-8153462)
chr7 (94-192)||(30024780-30024879)
chr7 (94-192)||(48489452-48489551)
chr7 (94-162)||(2361050-2361119)
chr7 (94-162)||(31518816-31518885)
chr7 (85-160)||(18396329-18396405)
chr7 (95-161)||(22328470-22328538)
chr7 (94-161)||(48599413-48599481)
[»] chr6 (10 HSPs)
chr6 (94-192)||(2972987-2973086)
chr6 (94-192)||(5043648-5043747)
chr6 (94-192)||(3808756-3808856)
chr6 (94-192)||(17758044-17758143)
chr6 (94-192)||(21588952-21589051)
chr6 (94-192)||(21593685-21593784)
chr6 (94-192)||(26830171-26830270)
chr6 (94-192)||(28137456-28137555)
chr6 (94-190)||(2171582-2171678)
chr6 (77-192)||(33160400-33160516)
[»] chr5 (11 HSPs)
chr5 (94-192)||(33831701-33831800)
chr5 (94-192)||(40147282-40147381)
chr5 (94-162)||(316783-316852)
chr5 (94-192)||(213486-213585)
chr5 (118-192)||(16452125-16452200)
chr5 (94-162)||(3325934-3326003)
chr5 (94-192)||(27637661-27637760)
chr5 (94-162)||(35616190-35616259)
chr5 (95-162)||(5887494-5887562)
chr5 (94-189)||(10054867-10054963)
chr5 (121-192)||(13239799-13239871)
[»] scaffold0002 (1 HSPs)
scaffold0002 (94-162)||(490399-490468)
[»] scaffold0219 (1 HSPs)
scaffold0219 (111-162)||(27521-27573)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 30909296 - 30909644
Alignment:
Q  1 aactttggtgatattctgggagaacattggaacctaaatttgttggtcctttttgcaactcttttgatcaaggaaagagagtggaaaataaatgtagaaa 100  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30909296 aacttcggtgatattctgggagaaaattggaacctaaatttgttggtcctttttgcaactcttttgatcaaggaaagagagtggaaaataaatgtagaaa 30909395  T
Q  101 ttagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatgactctttcatagtgaattggagagatgttatctc 200  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  30909396 ttaggtttactcttggagagcttgtttaaactaatttcttgtaactctttgtatctctttgtaatgactcgttgatagtgaattggagagatgttatctc 30909495  T
Q  201 ccccatatgtaggtcatttttaggctgacttgggtaatcaaattcttcgtatgttgtttttctactctcttcatcttgttgttcttgattgaatcattat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || |||||||||    
T  30909496 ccccatatgtaggtcatttttaggctgacttgggtaatcaaattcctcgtatgttgtttctctactctcttcatcttgttgttcttgttttaatcattat 30909595  T
Q  301 tttgctttacacttaattgctagattagataaagttttgttgttgcttg 349  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||    
T  30909596 tttgctttacacttaattgctagattagatctagatttgttgttgcttg 30909644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 40328800 - 40328900
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    ||||||||||| |||| |||| | |||||||||||||||| |||||||||||||  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  40328800 gtagaaattaggtttgttctttgtgagcttgtttaaactaatttcttgtaactcattttgtatctctttgtaagaactcattgatagtggattggagaga 40328899  T
Q  192 t 192  Q
    |    
T  40328900 t 40328900  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 3303817 - 3303718
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||  |||| |||| | |||||||||||| ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||| ||||||    
T  3303817 gtagaaattaagtttgttctttgtgagcttgtttaacctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattgaagagat 3303718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 4731679 - 4731778
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  |||||||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  4731679 gtagaaattagggttgctctttgtgagcttgttgaacctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 4731778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 40221766 - 40221865
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| |||||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  40221766 gtagaaattagggttgttctttgtgagcttgttgaaactaatttcttgtaacccatttgtatctctttgtaagaactcgttgatagtggattggagagat 40221865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 19491846 - 19491777
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||| |||| |||| | ||||||||| |||||| ||||||||||| | |||||||||||||||    
T  19491846 gtagaaattaggtttgttctttgtgagcttgttgaaactaatttcttgtaacccatttgtatctctttgt 19491777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 30143361 - 30143460
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  30143361 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 30143460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 1292610 - 1292541
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||  |||| |||| | ||||||||| || ||| ||||||||||||| |||||||||||||||    
T  1292610 gtagaaattaagtttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgt 1292541  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 4162518 - 4162587
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    |||||| |||| |||| |||| |||| |||||| || ||| ||||||||||||| |||||||||||||||    
T  4162518 gtagaagttaggtttgttctttgagaacttgttgaagctaatttcttgtaactcatttgtatctctttgt 4162587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 3772214 - 3772282
Alignment:
Q  95 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    |||||||||| |||| |||| | |||||| ||||| ||| ||||||||||||| ||||||| |||||||    
T  3772214 tagaaattaggtttgttctttgtgagcttatttaagctaatttcttgtaactcatttgtatatctttgt 3772282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 30291627 - 30291727
Alignment:
Q  94 gtagaaattagattt-gctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    ||||||||||| ||| | |||| | ||||||||| || ||| ||||||||||||| |||||||| |||||| |  | ||||| |||||| ||||||||||    
T  30291627 gtagaaattaggttttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatcactttgtaagaattctttgatagtggattggagaga 30291726  T
Q  192 t 192  Q
    |    
T  30291727 t 30291727  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 42435138 - 42435042
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggaga 189  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| ||||||||    
T  42435138 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggaga 42435042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 32091500 - 32091568
Alignment:
Q  95 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    |||||||||| |||| |||||||||| ||||| |||||| ||||||||||||| |||||||||||||||    
T  32091500 tagaaattaggtttgttcttggagagtttgttgaaactaatttcttgtaactcttttgtatctctttgt 32091568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 24969133 - 24969232
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||||||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||  || |||||| |||||||||||    
T  24969133 gtagaaattagatttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactaattgatagtggattggagagat 24969232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 34788922 - 34788853
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    |||||||||||  |||||||||||||||||||| ||  || ||||||||||||| |||||||||||||||    
T  34788922 gtagaaattaggattgctcttggagagcttgttgaagttaatttcttgtaactcttttgtatctctttgt 34788853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 8665429 - 8665528
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| ||||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  8665429 gtagaaattagggttgttctttgagagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 8665528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 12073413 - 12073512
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||| ||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  12073413 gtagaaattaggtttgttctttgtgagcttgttgaagctaatttattgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 12073512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 40632466 - 40632565
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaa-ctctttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||| ||| |||| | ||||||||| || ||| |||||||||| || ||||||||||||||| |  |||| || |||||| |||||||||||    
T  40632466 gtagaaattagagttgttctttgtgagcttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 40632565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 48893761 - 48893686
Alignment:
Q  118 gagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||| || ||| ||||||||||||| ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  48893761 gagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactctttgatagtggattggagagat 48893686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 192
Target Start/End: Complemental strand, 26175781 - 26175684
Alignment:
Q  96 agaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||  ||| |||| | ||||||||| |||||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  26175781 agaaattagggttgttctttgtgagcttgttgaaactaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 26175684  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 44570513 - 44570444
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaac-tctttgtatctctttgt 162  Q
    ||||||||||  |||| | |||||||||||||| |||||| ||||||||||| | |||||||||||||||    
T  44570513 gtagaaattatgtttgttgttggagagcttgttgaaactaatttcttgtaacatttttgtatctctttgt 44570444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 46703521 - 46703621
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  46703521 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccattttgtatctctttgtaagaactcatttatagtggattggagaga 46703620  T
Q  192 t 192  Q
    |    
T  46703621 t 46703621  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 27417113 - 27417013
Alignment:
Q  93 tgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    ||||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| ||||||||||    
T  27417113 tgtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaaaaactcattgatagtggattggagaga 27417014  T
Q  192 t 192  Q
    |    
T  27417013 t 27417013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 40417928 - 40417864
Alignment:
Q  151 gtatctctttgttatgactctttcatagtgaattggagagatgttatctcccccatatgtaggtc 215  Q
    |||||||||||| | || ||||| |||||| ||||||| |||||| ||||||||| |||||||||    
T  40417928 gtatctctttgtaaagattctttgatagtgtattggagtgatgttctctcccccaaatgtaggtc 40417864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 40975115 - 40975031
Alignment:
Q  135 tttcttgtaactct-ttgtatctctttgttatgactctttcatagtgaattggagagatgttatctcccccatatgtaggtcatt 218  Q
    ||||| |||||||| |||||||||||||| |||||||||| |||||  ||| ||||||||   |||||||||||| || ||||||    
T  40975115 tttctggtaactctattgtatctctttgtaatgactctttgatagtagattagagagatgcagtctcccccatatatatgtcatt 40975031  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 46147538 - 46147442
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggaga 189  Q
    |||||||||||  ||| || | | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  ||||||| |||||| ||||||||    
T  46147538 gtagaaattagggttgttcattgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactctttgatagtggattggaga 46147442  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 26364257 - 26364356
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | || |||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  26364257 gtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattaatagtggattggagagat 26364356  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 34112819 - 34112938
Alignment:
Q  75 aagagagtggaaaataaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatg-actctt 172  Q
    |||||| ||||||| ||| ||||||||||  |||| ||| |||||||||||| || ||| |||| |||||| | |||| |||||||||| | | |||| |    
T  34112819 aagagattggaaaaaaaaagtagaaattatgtttgttctaggagagcttgttgaagctaatttcatgtaacccttttgcatctctttgtaaagaactcat 34112918  T
Q  173 tcatagtgaattggagagat 192  Q
    | |||||||| |||||||||    
T  34112919 tgatagtgaagtggagagat 34112938  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 39662404 - 39662341
Alignment:
Q  90 aaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgta 153  Q
    |||||||||||| | ||||||||||||| || ||||| || ||| |||||||||||| ||||||    
T  39662404 aaatgtagaaatcaaatttgctcttggaaagattgttgaagctaatttcttgtaactatttgta 39662341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 50673970 - 50673895
Alignment:
Q  118 gagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  50673970 gagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 50673895  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 51904554 - 51904491
Alignment:
Q  95 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctct 158  Q
    |||||||||||| || |||||||||| ||||  || ||| ||||||| ||||||||||||||||    
T  51904554 tagaaattagatatgttcttggagagtttgtcgaatctaatttcttgcaactctttgtatctct 51904491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 52467501 - 52467402
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | ||||||||| || ||| | ||||||||| | |||||||| |||||| || ||| ||| |||||| |||||||||||    
T  52467501 gtagaaattaggtttgttctttgtgagcttgttgaagctaatatcttgtaacccatttgtatcactttgtaataactttttgatagtggattggagagat 52467402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 47038557 - 47038459
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||   ||||||||| ||||| | ||||| || |||||| |||||||||||    
T  47038557 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaatcatttgtatctgtttgtaaggactcattgatagtggattggagagat 47038459  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 44967977 - 44967908
Alignment:
Q  94 gtagaaattagattt-gctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgt 162  Q
    ||||||||||| ||| |||||||||||||||| | || | | |||||||||||  |||||||||||||||    
T  44967977 gtagaaattaggttttgctcttggagagcttgctgaagccaatttcttgtaaccatttgtatctctttgt 44967908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 6542327 - 6542227
Alignment:
Q  94 gtagaaattag-atttgctcttggagagcttgtttaaactattttcttgtaactcttt-gtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    ||||||||||| ||||| |||| | ||||||||| |||||| |||||||| |  |||| |||||||||||| |  |||| || |||||| ||||||||||    
T  6542327 gtagaaattaggatttgttctttgtgagcttgttgaaactaatttcttgttagccttttgtatctctttgtaagaactcgttgatagtggattggagaga 6542228  T
Q  192 t 192  Q
    |    
T  6542227 t 6542227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 6656004 - 6656076
Alignment:
Q  121 cttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  6656004 cttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 6656076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 22629046 - 22628986
Alignment:
Q  90 aaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactcttt 150  Q
    |||||||||||||||  ||||||||||||||||| || ||  || |||||| |||||||||    
T  22629046 aaatgtagaaattaggattgctcttggagagcttattgaagttaatttcttataactcttt 22628986  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 46860495 - 46860594
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| || |||| || |||||| |||||||||||    
T  46860495 gtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaataactcattgatagtggattggagagat 46860594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 22835149 - 22835050
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  22835149 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 22835050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 32744582 - 32744484
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||||| |||||||| |||||| |  ||||||| |||||| |||| ||||||    
T  32744582 gtagaaattag-tttgttctttgtgagcttgtttaagctaatttcttgtaactcatttgtatcactttgtaagaactctttgatagtggattgaagagat 32744484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 34491233 - 34491332
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  34491233 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 34491332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 29810887 - 29810988
Alignment:
Q  92 atgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagag 190  Q
    |||||||||||||| ||| |||| | || |||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||    
T  29810887 atgtagaaattagagttgttctttgtgaacttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagag 29810986  T
Q  191 at 192  Q
    ||    
T  29810987 at 29810988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 7764485 - 7764585
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactcttt-gtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | || |||||| || ||| |||||||||||||||| |||||||||||| |  |||| || |||||| |||||||||||    
T  7764485 gtagaaattagggttgttctttgtgaacttgttaaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 7764584  T
Q  193 g 193  Q
    |    
T  7764585 g 7764585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 32891124 - 32891224
Alignment:
Q  94 gtagaaatta-gatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||| | |||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| ||||||||||    
T  32891124 gtagaaattaagttttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcgttgatagtggattggagaga 32891223  T
Q  192 t 192  Q
    |    
T  32891224 t 32891224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 760868 - 760967
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| | || |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  760868 gtagaaattaggtctgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 760967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 7762286 - 7762385
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | || |||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  7762286 gtagaaattagggttgttctttgtgaacttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 7762385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 9581303 - 9581402
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | |||||||||||| ||| |||||| |||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  9581303 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttttaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 9581402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 30236146 - 30236245
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaac-tctttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  30236146 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 30236245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 44700625 - 44700526
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaac-tctttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||| ||||| || ||| ||||||||||| | ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  44700625 gtagaaattagggttgttctttgtgagtttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactctttgatagtggattggagagat 44700526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 51398835 - 51398934
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | || |||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  51398835 gtagaaattagggttgttcttagtgaacttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 51398934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 39153508 - 39153410
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    ||||||||||| |||| || | | |||||||||||| ||| ||||||||||||| |||||||| |||| | |  |||| || |||||| ||||||||||    
T  39153508 gtagaaattaggtttgttcattgtgagcttgtttaagctaatttcttgtaactcatttgtatccctttataagaactcattgatagtggattggagaga 39153410  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 9666614 - 9666514
Alignment:
Q  94 gtagaaattagattt-gctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    ||||||||||||||| | |||| | ||||||||| || ||| ||||||||||||| ||| || |||||||| |  | ||||| |||||| ||||||||||    
T  9666614 gtagaaattagattttgttctttgtgagcttgttgaagctaatttcttgtaactcatttatacctctttgtaagaattctttgatagtggattggagaga 9666515  T
Q  192 t 192  Q
    |    
T  9666514 t 9666514  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 11151738 - 11151639
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||||||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  ||||||  |||||| |||||||||||    
T  11151738 gtagaaattagatttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatcactttgtaagaactcttagatagtggattggagagat 11151639  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 28523170 - 28523071
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatgactctttcatagtgaattggagagatg 193  Q
    |||||||||| |||||||| ||||||| ||||  || ||| ||| || |||| |||||||||||||||| |||||||||| ||||||  ||| |||||||    
T  28523170 gtagaaattaaatttgctcgtggagagattgtggaatctaattttttataacactttgtatctctttgtaatgactctttgatagtgggttgaagagatg 28523071  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 723891 - 723792
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  723891 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 723792  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 36773607 - 36773682
Alignment:
Q  118 gagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||| || ||| ||||||||||||| ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  36773607 gagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactctttgatagtggattggagagat 36773682  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 42362373 - 42362472
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  42362373 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 42362472  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 45726950 - 45727049
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaa-ctctttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||| ||| |||| | ||||||||| || ||| |||||||||| || ||||||||||||||| |  |||| || |||||| |||||||||||    
T  45726950 gtagaaattagagttgttctttgtgagcttgttgaagctaatttcttgtaacctatttgtatctctttgtaagaactcattgatagtggattggagagat 45727049  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 42261633 - 42261564
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||  |||| |||||||||||||||| || ||| ||||||||||||| ||||||| |||||||    
T  42261633 gtagaaattaagtttgttcttggagagcttgttgaagctaatttcttgtaactcttttgtatatctttgt 42261564  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 11690522 - 11690621
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  | || || |||||| |||||||||||    
T  11690522 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaaatcgttgatagtggattggagagat 11690621  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 36318156 - 36318057
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| |||||| ||| ||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  36318156 gtagaaattagggttgttctttgtgagcttgttgaaactaatttattgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 36318057  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 36988223 - 36988124
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||  | ||||||||  |||||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  36988223 gtagaaattagggttgttctatgtgagcttgtcaaaactaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 36988124  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 7815395 - 7815321
Alignment:
Q  119 agcttgtttaaactattttcttgtaactcttt-gtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||| || ||| |||||||||||||||| |||||||||||| |  |||| || |||||| |||||||||||    
T  7815395 agcttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcatttatagtggattggagagat 7815321  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 8550934 - 8550835
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||||| |||||||| |||||| |  |||| || |||||| |||||||||||    
T  8550934 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaactcatttgtatccctttgtaagaactcattgatagtggattggagagat 8550835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 7482378 - 7482278
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| |  ||||||||||||||| |  |||| || |||||||||||||||||    
T  7482378 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccattttgtatctctttgtaagaactcattgatagtgaattggagaga 7482279  T
Q  192 t 192  Q
    |    
T  7482278 t 7482278  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 13547236 - 13547137
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||||||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  13547236 gtagaaattagggttgttctttgtgagcttgttgaagctattttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 13547137  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 193657 - 193731
Alignment:
Q  119 agcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||| || ||| ||||||||||||| ||||||||||||||| || |||| || |||||| |||||||||||    
T  193657 agcttgttgaagctaatttcttgtaactcatttgtatctctttgtaataactcattgatagtggattggagagat 193731  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 6808479 - 6808573
Alignment:
Q  100 attagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatg-actctttcatagtgaattggagagat 192  Q
    ||||| |||| |||||||||||||||| || |||  |||||||||||| ||||||||||||||| | | |||| || |||||| |||||||||||    
T  6808479 attaggtttgttcttggagagcttgttgaagctaacttcttgtaactcttttgtatctctttgtaaagaactcatttatagtggattggagagat 6808573  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 37168318 - 37168418
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  37168318 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccattttgtatctctttgtaagaactcattgatagtggattggagaga 37168417  T
Q  192 t 192  Q
    |    
T  37168418 t 37168418  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 41360935 - 41361004
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||| |||| |||| | ||||||||| |||||| ||||||||||| | |||||||||||||||    
T  41360935 gtagaaattaggtttgttctttgtgagcttgttgaaactaatttcttgtaacccatttgtatctctttgt 41361004  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 37560016 - 37559916
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaa-ctattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||||| ||| |||| | || |||||| ||| ||| ||||||||||| | ||||||||||||||| |  |||| || |||||||||||||||||    
T  37560016 gtagaaattagagttgttctttgtgaacttgttgaaagctaatttcttgtaacccatttgtatctctttgtaagaactcgttgatagtgaattggagaga 37559917  T
Q  192 t 192  Q
    |    
T  37559916 t 37559916  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 197055 - 196956
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||||||  || ||||||||||||| |||||||| |||||| |  |||| || |||||| |||||||||||    
T  197055 gtagaaattagggttgttctttgtgagcttgtttaagttaatttcttgtaactcatttgtatccctttgtaagaactcattgatagtggattggagagat 196956  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 28265701 - 28265602
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| || | | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  28265701 gtagaaattagggttgttcattgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactctttgatagtggattggagagat 28265602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 44455181 - 44455280
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | || |||||| |||||| ||||||||||||| ||||||||| ||||| |  |||| || |||||| |||||||||||    
T  44455181 gtagaaattagggttgttctttgtgaacttgttgaaactaatttcttgtaactcatttgtatctttttgtaagaactcattgatagtggattggagagat 44455280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 46064943 - 46065038
Alignment:
Q  98 aaattagatttgctcttggagagcttgtttaaactattttcttgtaactctt-tgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||| |||| |||| | ||||| ||| || ||| ||||||||||||| | ||||||||||||| |  |||| ||||||||| |||||||||||    
T  46064943 aaattaggtttgttctttgtgagctcgttgaagctaatttcttgtaactcatgtgtatctctttgtaagaactcattcatagtggattggagagat 46065038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 47255487 - 47255388
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  47255487 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 47255388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 834313 - 834215
Alignment:
Q  95 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| | |||||||| |||||| |  |||| || |||||| |||||||||||    
T  834313 tagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatccctttgtaagaactcattgatagtggattggagagat 834215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 40122342 - 40122276
Alignment:
Q  97 gaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||||| |||| | |||||||||||| ||| |||||| |||||| |||||||| ||||||    
T  40122342 gaaattagatttgttctttgtgagcttgtttaagctaatttcttataactcatttgtatcactttgt 40122276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 23555412 - 23555315
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagag 190  Q
    |||||||||||  ||| |||| | || |||||| |||||| |||||| |||||| ||||||||||||||| |  |||| || |||||| |||||||||    
T  23555412 gtagaaattagggttgttctttgtgaacttgttgaaactaatttcttataactcatttgtatctctttgtaagaactcattgatagtggattggagag 23555315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 47115192 - 47115292
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| |  ||||||||||||||| |  || | || |||||| ||||||||||    
T  47115192 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccattttgtatctctttgtaaaaacccattgatagtggattggagaga 47115291  T
Q  192 t 192  Q
    |    
T  47115292 t 47115292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 43363621 - 43363556
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctct 158  Q
    ||||||||||| |||| |||||||||||||||| |||||| ||| ||||||||| |||||||||||    
T  43363621 gtagaaattaggtttgttcttggagagcttgttgaaactaatttattgtaactcttttgtatctct 43363556  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 23565209 - 23565109
Alignment:
Q  94 gtagaaattagat-ttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    ||||||||||| | ||| |||| | ||||||||| |||||| ||||||||||||| ||||||||||||||| |  |||| || |||||| ||||||||||    
T  23565209 gtagaaattaggtcttgttctttgtgagcttgttgaaactaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagaga 23565110  T
Q  192 t 192  Q
    |    
T  23565109 t 23565109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 8359464 - 8359364
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||||  ||  |||| | |||||||||||||||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  8359464 gtagaaattagggtttttctttgtgagcttgtttaaactaatttcttgtaacccattttgtatctctttgtaagaactcattgatagtggattggagaga 8359365  T
Q  192 t 192  Q
    |    
T  8359364 t 8359364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 29608758 - 29608854
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggaga 189  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| ||||||||    
T  29608758 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggaga 29608854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 2390303 - 2390402
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| || |||| |  |||||| |||||||||||    
T  2390303 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaataactcatatatagtggattggagagat 2390402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 6431992 - 6432091
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  6431992 gtagaaattaggattgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcgttgatagtggattggagagat 6432091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 8153363 - 8153462
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||| ||||  || ||| ||||||||||||| ||||||||||||||| || |||| || |||||| |||||||||||    
T  8153363 gtagaaattagggttgttctttgtgagattgtcaaagctaatttcttgtaactcatttgtatctctttgtaataactcattgatagtggattggagagat 8153462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 30024879 - 30024780
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| || | | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  ||||||| |||||| |||||||||||    
T  30024879 gtagaaattagggttgttcattgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactctttgatagtggattggagagat 30024780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 48489452 - 48489551
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| || | |||||| || ||| ||||||||||| | ||||||||||||||  || |||| ||||||||| |||||||||||    
T  48489452 gtagaaattagggttgttctttgaaaacttgttgaagctaatttcttgtaacccatttgtatctctttgcaataactcattcatagtggattggagagat 48489551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 2361119 - 2361050
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| |||||||||||||||    
T  2361119 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgt 2361050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 31518816 - 31518885
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||| |||| |||| | |||||| || || ||| ||||||||||||| |||||||||||||||    
T  31518816 gtagaaattaggtttgttctttgtgagcttattgaagctagtttcttgtaactcatttgtatctctttgt 31518885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 18396329 - 18396405
Alignment:
Q  85 aaaataaatgtagaaattagattt-gctcttggagagcttgtttaaactattttcttgtaactctttgtatctcttt 160  Q
    |||| ||| ||||||||||| ||| | |||||||||| ||||| || ||||||| |||||||  |||||||||||||    
T  18396329 aaaaaaaaagtagaaattaggttttgttcttggagagtttgttgaacctatttttttgtaacattttgtatctcttt 18396405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 22328538 - 22328470
Alignment:
Q  95 tagaaattaga-tttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttg 161  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||    
T  22328538 tagaaattagagtttgttctttgtgagcttgttgaagctaatttcttgtaactcttttgtatctctttg 22328470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 48599481 - 48599413
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttg 161  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||    
T  48599481 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttg 48599413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 2973086 - 2972987
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  2973086 gtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 2972987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 5043648 - 5043747
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||  |||||||||||    
T  5043648 gtagaaattaggtttgttctttgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtagattggagagat 5043747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 3808856 - 3808756
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||||  ||| |||| | ||||||||| |||||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  3808856 gtagaaattagggttgttctttgtgagcttgttgaaactaatttcttgtaacccattttgtatctctttgtaagaactcattgatagtggattggagaga 3808757  T
Q  192 t 192  Q
    |    
T  3808756 t 3808756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 17758044 - 17758143
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  17758044 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 17758143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 21588952 - 21589051
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  21588952 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 21589051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 21593685 - 21593784
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  21593685 gtagaaattagggttgttctttgtgagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 21593784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 26830270 - 26830171
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaa-ctctttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||| ||| |||| | ||||||||| || ||| |||||||||| |  ||||||||||||||| |  |||| || |||||| |||||||||||    
T  26830270 gtagaaattagagttgttctttgtgagcttgttgaagctaatttcttgtaatccatttgtatctctttgtaagaactcattgatagtggattggagagat 26830171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 28137555 - 28137456
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | |||||||||||| ||| ||||||||||| | ||||||| ||||||| |  |||| || |||||| |||||||||||    
T  28137555 gtagaaattagggttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatttctttgtaagaactcattgatagtggattggagagat 28137456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 2171678 - 2171582
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatgactctttcatagtgaattggagag 190  Q
    |||||||||||  ||| |||| | || |||||  || ||| ||||||||||| |||||||||||||||| |  |||| || |||||| |||||||||    
T  2171678 gtagaaattagggttgttctttgtgaacttgtcaaagctaatttcttgtaaccctttgtatctctttgtaagaactcattgatagtggattggagag 2171582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 33160516 - 33160400
Alignment:
Q  77 gagagtggaaaataaatgtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttca 175  Q
    |||| ||| ||| ||| |||||||||||| ||| |||| | || |||||  || ||| ||||||||||||| ||||||||||||||| |  |||| || |    
T  33160516 gagattgggaaaaaaaggtagaaattagagttgttctttgtgaacttgtcaaagctaatttcttgtaactcttttgtatctctttgtaagaactcattga 33160417  T
Q  176 tagtgaattggagagat 192  Q
    | ||| |||||||||||    
T  33160416 tggtggattggagagat 33160400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 33831701 - 33831800
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||||| |||| |||| | |||||||||||| ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||| ||||||    
T  33831701 gtagaaattaggtttgttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattgaagagat 33831800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 40147282 - 40147381
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||||| ||||||||||||||| |  |||| || |||||| |||||||||||    
T  40147282 gtagaaattagggttgttcttcgtgagcttgttgaagctaatttcttgtaactcatttgtatctctttgtaagaactcattgatagtggattggagagat 40147381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 316783 - 316852
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaa-ctctttgtatctctttgt 162  Q
    ||||||||||| |||| |||||||||||||||| || ||| |||||||||| |  |||||||||||||||    
T  316783 gtagaaattaggtttgttcttggagagcttgttgaagctaatttcttgtaatccttttgtatctctttgt 316852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 213486 - 213585
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||||||||  ||| |||| | ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| || |||||| |||||||||||    
T  213486 gtagaaattagggttgttctttgtgagcttgttaaagctaatttcttgtaacccatttgtatctctttgtaagaactcattgatagtggattggagagat 213585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 16452125 - 16452200
Alignment:
Q  118 gagcttgtttaaactattttcttgtaactc-tttgtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    ||||||||| || ||| ||||||||||| | ||||||||||||||| |  |||| ||||||||| |||||||||||    
T  16452125 gagcttgttgaagctaatttcttgtaacccatttgtatctctttgtaagaactcattcatagtggattggagagat 16452200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 3325934 - 3326003
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctt-tgtatctctttgt 162  Q
    ||||||||||| |||| ||||| |||||||||| || ||| |||||||||||  || |||||||||||||    
T  3325934 gtagaaattagttttgttcttgaagagcttgttgaagctaatttcttgtaaccattgtgtatctctttgt 3326003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 27637760 - 27637661
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc--tttgtatctctttgttatgactctttcatagtgaattggagaga 191  Q
    |||||||||||  ||| ||||   |||||||||||||||| ||||||||||| |  ||||||||||||||| |  |||| || |||||| ||||||||||    
T  27637760 gtagaaattagggttgttctttatgagcttgtttaaactaatttcttgtaacccattttgtatctctttgtaagaactcatt-atagtggattggagaga 27637662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 35616190 - 35616259
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||| |||| |||||||||||| ||||||  || ||||||||||| | ||||||| |||||||    
T  35616190 gtagaaattaggtttgttcttggagagctcgtttaagttaatttcttgtaacccttttgtatttctttgt 35616259  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 5887562 - 5887494
Alignment:
Q  95 tagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||||||| |||| | |||||||||||| ||| ||||||| ||| | |||||||| ||||||    
T  5887562 tagaaattagatttgttctttgtgagcttgtttaagctaatttcttgcaacccatttgtatcactttgt 5887494  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 10054963 - 10054867
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactctttgtatctctttgttatg-actctttcatagtgaattggaga 189  Q
    ||||||||||  |||| ||||| |||| ||||| || ||| |||||| ||||  ||||||||||||||| ||| |||| || |||||| ||||||||    
T  10054963 gtagaaattatgtttgttcttgaagagtttgttgaagctaatttcttataaccttttgtatctctttgtaatgaactcattgatagtgtattggaga 10054867  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 13239799 - 13239871
Alignment:
Q  121 cttgtttaaactattttcttgtaactcttt-gtatctctttgttatgactctttcatagtgaattggagagat 192  Q
    |||||| || ||| |||||||||||||||| |||||||||||| |  |||| || |||||| |||||||||||    
T  13239799 cttgttgaagctaatttcttgtaactcttttgtatctctttgtaagaactcattgatagtggattggagagat 13239871  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 490468 - 490399
Alignment:
Q  94 gtagaaattagatttgctcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||||||||  |||| |||||||||||||||| || ||| ||||||||||||| ||||||| |||||||    
T  490468 gtagaaattaagtttgttcttggagagcttgttgaagctaatttcttgtaactcttttgtatatctttgt 490399  T

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Target: scaffold0219 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 27573 - 27521
Alignment:
Q  111 tcttggagagcttgtttaaactattttcttgtaactc-tttgtatctctttgt 162  Q
    ||||| |||||||||| || ||| ||||||||||||| |||||||||||||||    
T  27573 tcttgaagagcttgttgaagctaatttcttgtaactcatttgtatctctttgt 27521  T

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