View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_low_12 (Length: 353)
Name: NF7798_low_12
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 11003753 - 11003417
Alignment:
| Q |
1 |
ggacgaaaagaggtatttacccttaannnnnnnattattagtctcttaaataaaattctctattgttcatattgaagatatacaacatatgcacacaaca |
100 |
Q |
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| T |
11003753 |
ggacaaaaagaggtatttacccttaatatttttattattagtctcttaaataaa-ttctctattgttcatattgaagatatacaacatatgcacacaaca |
11003655 |
T |
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| Q |
101 |
accttaggtgtagctgtcctgctgttcctagtcataaaccttgttttgtttctccttgtcattgtgatgatcaatgagaaaaaaccttcgaatttctgaa |
200 |
Q |
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| T |
11003654 |
accttaggtgtagctgtcctgctgttcctagtcataaaccttgttttgtttctccttgtcattgtgatgataaatgagaaaaaactttcgaatttctgaa |
11003555 |
T |
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| Q |
201 |
agttattgacggacttggttactttg-ttttgattttcttcttctctttggaaaatcgatatgtcctcctgtcaagcatcttgccgtagaaattgctcgt |
299 |
Q |
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| T |
11003554 |
aggtattgacggacttggtaactttgttttttattttctttttctcttttgaaaatcgatatgtcctcctgtcaatcatcttgccgtagaaattgctctt |
11003455 |
T |
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| Q |
300 |
ct-taaaaatgttcttccatagaagttcgggaactgtt |
336 |
Q |
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| T |
11003454 |
gtctagcaatgttctaccatagaagttcgggaactgtt |
11003417 |
T |
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