View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7798_low_13 (Length: 345)

Name: NF7798_low_13
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7798_low_13
NF7798_low_13
[»] scaffold0053 (1 HSPs)
scaffold0053 (9-331)||(79442-79765)
[»] chr7 (16 HSPs)
chr7 (9-331)||(16090855-16091178)
chr7 (9-331)||(29181061-29181384)
chr7 (9-327)||(20906414-20906730)
chr7 (151-327)||(2966749-2966926)
chr7 (9-157)||(2971209-2971356)
chr7 (46-309)||(2465165-2465427)
chr7 (49-316)||(3857357-3857624)
chr7 (9-116)||(14319582-14319688)
chr7 (42-110)||(31155396-31155464)
chr7 (13-116)||(14230777-14230879)
chr7 (60-112)||(11382873-11382925)
chr7 (60-112)||(11389350-11389402)
chr7 (50-112)||(21230952-21231014)
chr7 (60-131)||(13679474-13679546)
chr7 (60-112)||(14422985-14423037)
chr7 (60-112)||(16009577-16009629)
[»] chr4 (6 HSPs)
chr4 (18-331)||(16146791-16147105)
chr4 (60-168)||(14486604-14486713)
chr4 (50-115)||(27906263-27906328)
chr4 (42-109)||(53483708-53483775)
chr4 (60-112)||(15408140-15408192)
chr4 (166-234)||(27906142-27906210)
[»] scaffold0072 (1 HSPs)
scaffold0072 (9-331)||(49922-50246)
[»] chr3 (17 HSPs)
chr3 (9-327)||(14865630-14865948)
chr3 (9-327)||(12033398-12033715)
chr3 (9-327)||(17131516-17131834)
chr3 (46-318)||(19235057-19235330)
chr3 (42-196)||(51301506-51301659)
chr3 (52-188)||(13323782-13323920)
chr3 (52-118)||(13302235-13302301)
chr3 (52-118)||(13312891-13312957)
chr3 (9-112)||(23370458-23370560)
chr3 (42-116)||(10389428-10389502)
chr3 (42-116)||(10414517-10414591)
chr3 (42-116)||(10421187-10421261)
chr3 (52-109)||(24933823-24933880)
chr3 (60-112)||(9534328-9534380)
chr3 (60-112)||(18929246-18929298)
chr3 (60-112)||(20247791-20247843)
chr3 (60-112)||(24192957-24193009)
[»] chr1 (7 HSPs)
chr1 (9-327)||(21710603-21710920)
chr1 (9-314)||(20851085-20851390)
chr1 (9-314)||(20857712-20858017)
chr1 (9-314)||(21706073-21706378)
chr1 (52-110)||(20044946-20045004)
chr1 (60-196)||(32651488-32651625)
chr1 (60-112)||(20437026-20437078)
[»] chr8 (8 HSPs)
chr8 (9-314)||(24320623-24320928)
chr8 (60-289)||(29643388-29643619)
chr8 (42-112)||(44477623-44477693)
chr8 (42-112)||(44492781-44492851)
chr8 (60-143)||(18614240-18614325)
chr8 (60-112)||(8727735-8727787)
chr8 (9-112)||(14056517-14056618)
chr8 (60-112)||(23482055-23482107)
[»] chr2 (13 HSPs)
chr2 (9-296)||(25180882-25181169)
chr2 (8-331)||(10357-10680)
chr2 (9-116)||(26885179-26885284)
chr2 (9-116)||(27207672-27207778)
chr2 (29-110)||(23168271-23168351)
chr2 (29-110)||(23579528-23579608)
chr2 (60-112)||(6483718-6483770)
chr2 (60-112)||(6487185-6487237)
chr2 (60-112)||(21908360-21908412)
chr2 (166-234)||(23168412-23168480)
chr2 (60-112)||(23265143-23265195)
chr2 (60-112)||(23280211-23280263)
chr2 (166-234)||(23579669-23579737)
[»] chr6 (15 HSPs)
chr6 (46-318)||(9099060-9099333)
chr6 (9-314)||(20007900-20008205)
chr6 (9-316)||(21364436-21364738)
chr6 (9-316)||(23968418-23968720)
chr6 (188-318)||(29097658-29097789)
chr6 (42-110)||(15458492-15458560)
chr6 (42-110)||(15465087-15465155)
chr6 (42-116)||(31252419-31252493)
chr6 (42-110)||(11288653-11288721)
chr6 (50-112)||(10986173-10986235)
chr6 (42-112)||(34639971-34640041)
chr6 (42-112)||(34646645-34646715)
chr6 (60-112)||(4477858-4477910)
chr6 (60-112)||(23839199-23839251)
chr6 (60-112)||(29614149-29614201)
[»] scaffold0023 (1 HSPs)
scaffold0023 (9-327)||(135224-135540)
[»] chr5 (21 HSPs)
chr5 (9-314)||(19236698-19237002)
chr5 (9-318)||(20772764-20773069)
chr5 (9-314)||(22460953-22461258)
chr5 (9-296)||(22467595-22467882)
chr5 (9-318)||(20781539-20781844)
chr5 (46-318)||(24929917-24930190)
chr5 (9-327)||(28909243-28909558)
chr5 (9-327)||(28945638-28945953)
chr5 (9-327)||(28895995-28896310)
chr5 (9-327)||(28924821-28925136)
chr5 (49-327)||(28889329-28889606)
chr5 (49-225)||(20820105-20820279)
chr5 (49-225)||(20827205-20827379)
chr5 (137-327)||(28931061-28931250)
chr5 (60-196)||(18407946-18408084)
chr5 (50-116)||(34830081-34830146)
chr5 (60-112)||(19512387-19512439)
chr5 (60-112)||(22438750-22438802)
chr5 (60-112)||(23111202-23111254)
chr5 (60-112)||(28370057-28370109)
chr5 (60-112)||(38144539-38144591)
[»] scaffold0348 (1 HSPs)
scaffold0348 (52-327)||(9121-9396)
[»] scaffold0384 (1 HSPs)
scaffold0384 (52-309)||(16059-16316)
[»] scaffold1318 (1 HSPs)
scaffold1318 (9-206)||(1865-2062)
[»] scaffold1469 (1 HSPs)
scaffold1469 (42-327)||(1142-1425)
[»] scaffold0131 (1 HSPs)
scaffold0131 (9-327)||(784-1098)
[»] scaffold0029 (2 HSPs)
scaffold0029 (46-316)||(91191-91462)
scaffold0029 (46-316)||(96917-97188)
[»] scaffold0127 (1 HSPs)
scaffold0127 (9-129)||(10222-10341)
[»] scaffold0609 (1 HSPs)
scaffold0609 (42-116)||(5842-5916)
[»] scaffold0099 (1 HSPs)
scaffold0099 (60-309)||(12753-13018)
[»] scaffold0001 (1 HSPs)
scaffold0001 (9-116)||(492981-493086)
[»] scaffold0249 (1 HSPs)
scaffold0249 (42-110)||(13879-13947)
[»] scaffold0553 (1 HSPs)
scaffold0553 (9-112)||(10148-10250)
[»] scaffold0544 (1 HSPs)
scaffold0544 (9-112)||(1478-1580)
[»] scaffold0183 (1 HSPs)
scaffold0183 (46-110)||(6-70)
[»] scaffold0261 (2 HSPs)
scaffold0261 (50-116)||(23562-23628)
scaffold0261 (166-234)||(23680-23748)
[»] scaffold0034 (1 HSPs)
scaffold0034 (50-116)||(73281-73347)
[»] scaffold0720 (1 HSPs)
scaffold0720 (36-116)||(3381-3461)
[»] scaffold0026 (2 HSPs)
scaffold0026 (42-112)||(111686-111756)
scaffold0026 (60-112)||(11853-11905)
[»] scaffold0453 (1 HSPs)
scaffold0453 (53-116)||(10546-10609)
[»] scaffold2054 (1 HSPs)
scaffold2054 (60-110)||(717-767)
[»] scaffold1461 (1 HSPs)
scaffold1461 (60-116)||(1487-1543)
[»] scaffold0107 (1 HSPs)
scaffold0107 (50-112)||(40524-40586)
[»] scaffold0924 (1 HSPs)
scaffold0924 (60-112)||(753-805)
[»] scaffold0317 (1 HSPs)
scaffold0317 (60-131)||(1367-1439)
[»] scaffold0247 (1 HSPs)
scaffold0247 (60-112)||(11342-11394)
[»] scaffold0222 (1 HSPs)
scaffold0222 (60-112)||(16821-16873)
[»] scaffold0154 (1 HSPs)
scaffold0154 (60-112)||(30858-30910)
[»] scaffold0025 (1 HSPs)
scaffold0025 (60-112)||(14398-14450)
[»] scaffold0019 (1 HSPs)
scaffold0019 (60-112)||(135474-135526)
[»] scaffold0004 (1 HSPs)
scaffold0004 (60-112)||(116897-116949)


Alignment Details
Target: scaffold0053 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 79442 - 79765
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  79442 gagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 79541  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  79542 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 79641  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  79642 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgtatgaa 79741  T
Q  308 tgcttgattgggctgaattgatgt 331  Q
    ||||||||||||||||||||||||    
T  79742 tgcttgattgggctgaattgatgt 79765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 16091178 - 16090855
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16091178 gagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 16091079  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16091078 agttaatcaattaaactgttcctaaggtaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 16090979  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16090978 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 16090879  T
Q  308 tgcttgattgggctgaattgatgt 331  Q
    ||||||||||||||||||||||||    
T  16090878 tgcttgattgggctgaattgatgt 16090855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 29181061 - 29181384
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29181061 gagaagaacttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 29181160  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  29181161 aattaatcaattaaactattcttaaggtaaaatttggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggcttataatgttgtat 29181260  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29181261 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgtatgaa 29181360  T
Q  308 tgcttgattgggctgaattgatgt 331  Q
    ||||||||||||||||||||||||    
T  29181361 tgcttgattgggctgaattgatgt 29181384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 20906414 - 20906730
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20906414 gagaagaacttaggaacggattt-gctgagctatttgtccttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 20906512  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||     
T  20906513 aattaatcaattgaactattcttaaggtaaaattgggaat-taagggttaatgatgattttgaaagaaaaggtataagaatcaagtttataatgttgtac 20906611  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||  ||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||||| || | |||    
T  20906612 tttgatgtttagtatgatttcttaatctatgttgttgatgttgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttgagaagttttgtaagaa 20906710  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||||||| ||||||||||||    
T  20906711 tgcttgaatgggctgaattg 20906730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 151 - 327
Target Start/End: Complemental strand, 2966926 - 2966749
Alignment:
Q  151 aagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatatt 249  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||| ||  ||||||||||||||||||||||||||||||||||| ||    
T  2966926 aagggttaatgatgtttttgaaagaaaaggtataagaatcaggtttttaatgttgtactttgatgattagtatgatttcttaatccatgttgttgatgtt 2966827  T
Q  250 gatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaatgcttgattgggctgaattg 327  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  2966826 gatcgtaattggaatgaaaatagaatatgatggatgaattttggaagttttgtatgaatgcttgaatgggctgaattg 2966749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 2971356 - 2971209
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  2971356 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatttataatttctgaa 2971258  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggtt 157  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||    
T  2971257 aattaatcaattgaactgttcttaaggtaaaattgggaagataagggtt 2971209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 309
Target Start/End: Complemental strand, 2465427 - 2465165
Alignment:
Q  46 tctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggtaaaattggg 145  Q
    ||||||||||||| ||||||||||||||| ||| ||||||| | ||||||| | ||||||||||||||| ||||| ||||||| ||| ||||||| | ||    
T  2465427 tctttgcaattctaaggtaagggtgggatcatccttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaattgg 2465328  T
Q  146 aaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttga 245  Q
     |||| ||||||||||   ||||  ||||||| |||||||| | |||||||||||||| |||||| ||||||| ||||||||| || ||  | |||||||    
T  2465327 gaaattagggttaatggcaattttgaagaaaatgtgtaagatttaggtttataatgttatatttg-atgattaatatgatttcctactctgtattgttga 2465229  T
Q  246 tattgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttttggaagttctgaatgaatg 309  Q
    | |||||| ||||||  |||||  |||||||| ||||||||| ||||| ||||||||||||||||    
T  2465228 tgttgatcataattg-gatgaaggtagaatataatggatgaagttttgaaagttctgaatgaatg 2465165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 49 - 316
Target Start/End: Original strand, 3857357 - 3857624
Alignment:
Q  49 ttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggt---aaaattggg 145  Q
    |||||||||| ||||||||||||||| ||||| ||||| | ||||||| | ||||||||||||||| ||||| ||||||| ||| |||   |||||||||    
T  3857357 ttgcaattctaaggtaagggtgggatcatctt-caataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaattggg 3857455  T
Q  146 aaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttga 245  Q
     |||| ||||||||||   ||||  ||||||| |||||||| | ||||||||||||||||||||| ||||||| ||||||||| || ||  | |||||||    
T  3857456 -aaattagggttaatggcaattttgaagaaaatgtgtaagatttaggtttataatgttgtatttg-atgattaatatgatttcctactctgtattgttga 3857553  T
Q  246 tattgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttttggaagttctgaatgaatgcttgatt 316  Q
    | |||||  ||||||  |||||  |||||||| || |||||| ||||| |||||||||||||||| ||||||    
T  3857554 tgttgattataattg-gatgaaggtagaatataatagatgaagttttgaaagttctgaatgaatgtttgatt 3857624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 14319582 - 14319688
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||  |  |||| | |||||||||||    
T  14319582 gagaagaacttaggaacggattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatgattttaatgtataatttctgaa 14319680  T
Q  109 aattaatc 116  Q
    ||||||||    
T  14319681 aattaatc 14319688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 31155464 - 31155396
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | ||||||| |||||||||||||    
T  31155464 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 31155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 14230879 - 14230777
Alignment:
Q  13 agaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||||  ||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||     |||| | |||||||||||||||    
T  14230879 agaacttaggaacggattt-gtcgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatgaatttaatgtataatttctgaaaatt 14230781  T
Q  113 aatc 116  Q
    ||||    
T  14230780 aatc 14230777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 11382873 - 11382925
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||||| |||||||||||||||    
T  11382873 aggtaagggtgagactatctctcaataatcataatatataatttctgaaaatt 11382925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 11389350 - 11389402
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||||| |||||||||||||||    
T  11389350 aggtaagggtgagactatctctcaataatcataatatataatttctgaaaatt 11389402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 21230952 - 21231014
Alignment:
Q  50 tgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||| ||| ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  21230952 tgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 21231014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 13679546 - 13679474
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc-aattaaactgttctt 131  Q
    ||||||||||| || |||||||||||  |||| |||| |||||| |||||||| ||| ||||||| |||||||    
T  13679546 aggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaattaaattgttctt 13679474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 14423037 - 14422985
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  14423037 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 14422985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 16009629 - 16009577
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  16009629 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 16009577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 16146791 - 16147105
Alignment:
Q  18 ttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatca 117  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146791 ttaggaactgattttgctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatca 16146890  T
Q  118 attaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgat 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146891 attaaactgttcttaaggtaaaatttggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgat 16146990  T
Q  217 tagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaatgcttgatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16146991 tagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgtatgaatgcttgatt 16147090  T
Q  317 gggctgaattgatgt 331  Q
    |||||||||||||||    
T  16147091 gggctgaattgatgt 16147105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 14486713 - 14486604
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc-aattaaactgttctt-aaggtaaaattgggaaaataagggtt 157  Q
    ||||||||||| || |||| ||||||  ||||||||| ||||||||||||||||||| |||| || ||||||| ||| |||||||||||| || ||||||    
T  14486713 aggtaagggtgagactatccttcaatgatcataatatataatttctgaaaattaatcgaattgaattgttcttgaagataaaattgggaatat-agggtt 14486615  T
Q  158 aatgatgattt 168  Q
     ||||||||||    
T  14486614 gatgatgattt 14486604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 27906328 - 27906263
Alignment:
Q  50 tgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaat 115  Q
    ||||||||| || |||||||||||||||||||||||  ||||||| | ||||||||||||||||||    
T  27906328 tgcaattctaagataagggtgggattatctttcaatgatcataatgtataatttctgaaaattaat 27906263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 53483775 - 53483708
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaa 109  Q
    |||||||| |||||||| ||||||||||| || ||||| |||||| ||||||| | ||||| ||||||    
T  53483775 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa 53483708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 15408192 - 15408140
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  15408192 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 15408140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 27906210 - 27906142
Alignment:
Q  166 tttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatc 234  Q
    ||||||||||||||||||||||||| |||||   ||||||| ||  ||| |  ||||||||||||||||    
T  27906210 tttgaaagaaaaggtgtaagaatcatgtttaatgtgttgtaatttgatgttccgtatgatttcttaatc 27906142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 49922 - 50246
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49922 gagaagaacttaggaactgattttgttgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctaaa 50021  T
Q  109 aattaatcaattaaactgttcttaaggtaaaa-ttgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgta 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  50022 aattaatcaattaaactgttcttaaggtaaaaattgggaaaataagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttataatgttata 50121  T
Q  207 tttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatga 306  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50122 tttgaaagattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgtatga 50221  T
Q  307 atgcttgattgggctgaattgatgt 331  Q
    |||||||||||||||||||||||||    
T  50222 atgcttgattgggctgaattgatgt 50246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 14865948 - 14865630
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14865948 gagaagaacttaggaactgattt-gctgtgctatttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 14865850  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||     
T  14865849 aattaatcaattaaactgttcttaaggtaaaattgggaaaataatggttaatgatgattttgaaagaaaaggtgtaagaagcaggtttataatgttgtac 14865750  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14865749 ttggatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgtatgaa 14865650  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||||||||||||||||||||    
T  14865649 tgcttgattgggctgaattg 14865630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 12033398 - 12033715
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12033398 gagaagaacttaggaactgattt-gatgtgct-tttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 12033495  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||     
T  12033496 aattaatcaattgaactgttcttaaggtaaaattgggaaattaagggttaatgatgattttgaaagaaaaggtataagaatcaggtttataatgttgtac 12033595  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||  ||| ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||    
T  12033596 tttgatgtttagtatgatttcttaatctatgttgttgatgttgatcgtaattgaattgaaaatagaatatgatggatgaattttggaagttttgtatgaa 12033695  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||||||| ||||||||||||    
T  12033696 tgcttgaatgggctgaattg 12033715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 17131834 - 17131516
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17131834 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 17131736  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||     
T  17131735 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttataatgttgtac 17131636  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||  ||| ||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| | || |||||    
T  17131635 tttgatgtttagtatgatttcttaatctatgttgttgatgttgattgtaattggaatgaaaatagaatatgatggatgaattttggaagctttgcatgaa 17131536  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||||| | || |||||||||    
T  17131535 tgcttaaatgagctgaattg 17131516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 46 - 318
Target Start/End: Original strand, 19235057 - 19235330
Alignment:
Q  46 tctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa-ttaatcaattaaactgttcttaaggtaaaattgg 144  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||    
T  19235057 tctttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaaattaatcaatttaactgttcttaaggtaaaattgg 19235156  T
Q  145 gaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttg 244  Q
    |||| | ||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||    
T  19235157 gaaatttagggttaatgatgattctgaagaaaatgtgtaagaatcaggtttataatgttgtatttg-atgattagtatgatttcctaatctatattgttg 19235255  T
Q  245 atattgatcgtaa-ttgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaatgcttgattgg 318  Q
    ||||||||| ||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  19235256 atattgatcataatttggagtgaaaatagaatatgatagatgaattttggaagttctgaatgaatgtttgattgg 19235330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 51301659 - 51301506
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaag-gtaaaa 140  Q
    |||||||| |||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| || ||||| | ||  |||||    
T  51301659 tttgtcttcgcaattctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaattaatcaattgaattgttcatgagaataaaa 51301560  T
Q  141 ttgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggttta 196  Q
    |||||  ||| |||||| ||| | |||||||||  | |||| ||||||||||||||    
T  51301559 ttggg--aattagggttgatgctaatttgaaagggatggtgcaagaatcaggttta 51301506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 13323782 - 13323920
Alignment:
Q  52 caattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc-aattaaactgttctt-aaggtaaaattgggaaaa 149  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||| ||| |||||||||| ||     
T  13323782 caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaattaatcaaattagattgttcttgaagataaaattggg-aat 13323880  T
Q  150 taagggttaatgatga-tttgaaagaaaaggtgtaagaat 188  Q
    | |||||| ||||||| || ||||| || |||||||||||    
T  13323881 ttagggttgatgatgacttcgaaaggaatggtgtaagaat 13323920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 13302235 - 13302301
Alignment:
Q  52 caattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaa 118  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  13302235 caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaattaatcaa 13302301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 13312891 - 13312957
Alignment:
Q  52 caattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaa 118  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  13312891 caattctaaggtaagggtgagattatctttcaataatcataatatgtaatttttgaaaattaatcaa 13312957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 23370458 - 23370560
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||| | ||||||| |||||||||||||| ||||| |||||| ||||||| | |||||||||||    
T  23370458 gagaagaacttaggaacggattt-gctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatctataatttctgaa 23370556  T
Q  109 aatt 112  Q
    ||||    
T  23370557 aatt 23370560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 10389428 - 10389502
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | ||||| | ||||||||||||| |||||    
T  10389428 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10389502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 10414517 - 10414591
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | ||||| | ||||||||||||| |||||    
T  10414517 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10414591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 10421187 - 10421261
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | ||||| | ||||||||||||| |||||    
T  10421187 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatc 10421261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 24933823 - 24933880
Alignment:
Q  52 caattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaa 109  Q
    ||||||| ||||||||||| || ||||| |||||| ||||||| | ||||||||||||    
T  24933823 caattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 24933880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 9534380 - 9534328
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  9534380 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 9534328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 18929298 - 18929246
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| |||| |||| |||||||||||||||    
T  18929298 aggtaagggtgagactatctctcaataatcatgatatataatttctgaaaatt 18929246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 20247791 - 20247843
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  20247791 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 20247843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 24193009 - 24192957
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  24193009 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 24192957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 21710920 - 21710603
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21710920 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 21710822  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||| | ||||| |||||||||||| || |||| ||||||||||||||||| ||     
T  21710821 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggtttaagatgattttgaaagaaaaagtataaggatcaggtttataatgttatac 21710722  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||| ||| ||||||||||| ||||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| | || |||||    
T  21710721 ttg-atgtttagtatgattccttaatctatgttgttgatgttgatcataattggaatgaaaatagaatatgatggatgaattttggaagctttgtatgaa 21710623  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||||||| ||||||||||||    
T  21710622 tgcttgaatgggctgaattg 21710603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 20851085 - 20851390
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20851085 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 20851183  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| |||| |||||||||||| |||||||     
T  20851184 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtac 20851283  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||  ||| ||||||||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||   || |||||    
T  20851284 tttgatgtttagtatgatttcttaatctatgttgttgatgctgatcgtaattggaatgaaaatagaatatgatgaatgaattttggaagccttgcatgaa 20851383  T
Q  308 tgcttga 314  Q
    |||||||    
T  20851384 tgcttga 20851390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 20857712 - 20858017
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20857712 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 20857810  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| |||| |||||||||||| |||||||     
T  20857811 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtac 20857910  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||  ||| |||||||| |||||||||| |||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||   || |||||    
T  20857911 tttgatgtttagtatgttttcttaatctatgttgttgatgctgatcgtaattggaatgaaaatagaatatgatgaatgaattttggaagccttgcatgaa 20858010  T
Q  308 tgcttga 314  Q
    |||||||    
T  20858011 tgcttga 20858017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 21706378 - 21706073
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21706378 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 21706280  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| |||| |||||||||||| |||||||     
T  21706279 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtac 21706180  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||  ||| |||||||| |||||||||| |||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||   || |||||    
T  21706179 tttgatgtttagtatgttttcttaatctatgttgttgatgctgatcgtaattggaatgaaaatagaatatgatgaatgaattttggaagccttgcatgaa 21706080  T
Q  308 tgcttga 314  Q
    |||||||    
T  21706079 tgcttga 21706073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 20044946 - 20045004
Alignment:
Q  52 caattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||||| ||||||||||||||||||| ||||||  || |||||| ||| |||||||||    
T  20044946 caattctaaggtaagggtgggattatccttcaatgatcttaatatataaattctgaaaa 20045004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 32651625 - 32651488
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc-aattaaactgttctt--aaggtaaaattgggaaaataagggt 156  Q
    ||||||||||| || ||||| |||||| ||||| ||| ||||||||||||||| ||| |||| |  |||||||  ||   |||||||||  ||| |||||    
T  32651625 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattgagttgttcttgaaaataaaaattggg--aattagggt 32651528  T
Q  157 taatgatgatttgaaagaaaaggtgtaagaatcaggttta 196  Q
    | ||| |||||||||||  | ||||||||||||| |||||    
T  32651527 tgatgctgatttgaaagggatggtgtaagaatcatgttta 32651488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 20437026 - 20437078
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  20437026 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 20437078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 24320623 - 24320928
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24320623 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 24320721  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| || | |||||||||||| |||||||     
T  24320722 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtatagggatcaggtttatattgttgtac 24320821  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||  ||| ||||||||||||||||||| |||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||   || |||||    
T  24320822 tttgatgtttagtatgatttcttaatctatgttgttgatgctgatcgtaattggaatgaaaatagaatatgatgaatgaattttggaagccttgcatgaa 24320921  T
Q  308 tgcttga 314  Q
    |||||||    
T  24320922 tgcttga 24320928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 60 - 289
Target Start/End: Original strand, 29643388 - 29643619
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc-aattaaactgttc-ttaaggtaaaattgggaaaataagggtt 157  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||| | ||| |||||||| | || ||||||||    
T  29643388 aggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaattaatcaaattgaattgttcatgaagataaaattgag-aattaagggtt 29643486  T
Q  158 aatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatattgatcgta 256  Q
     |||||||||| | ||| |  |||||||||||  |||| ||  ||||||| ||   || | ||||||||||||||||| ||  |||||||  |||||  |    
T  29643487 gatgatgatttaggaaggattggtgtaagaattgggttaattgtgttgtaatttggtgttcagtatgatttcttaatctataatgttgattgtgatcaga 29643586  T
Q  257 attgaaatgaaaatagaatatgatggatgaatt 289  Q
    |||| ||||||||||||||||| ||||||||||    
T  29643587 attggaatgaaaatagaatatgttggatgaatt 29643619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 44477693 - 44477623
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||  ||||||| ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  44477693 tttgtcttcacaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 44477623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 44492851 - 44492781
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||  ||||||| ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  44492851 tttgtcttcacaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 44492781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 18614325 - 18614240
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaat-caattaaactgttctt-aaggtaaaattg 143  Q
    ||||||||||| || ||||| |||||| |||| |||| ||||||||||||||| || ||||| || ||||||| ||| ||||||||    
T  18614325 aggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattgatccaattgaattgttcttgaagataaaattg 18614240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 8727735 - 8727787
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| |||||||  |||||| ||||||| | |||||||||||||||    
T  8727735 aggtaagggtgagattatccctcaataatcataatctataatttctgaaaatt 8727787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 14056517 - 14056618
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||| | ||||||  ||||||||||||| || | |||  |||| ||| ||||||||||| || ||||| |||||| | ||| ||||||| |||||||    
T  14056517 gagaagagcctaggaaccgattttgttgtgcaatctttct--gcaaatctaaggtaagggtgagactatctctcaataataatagtatgtaaattctgaa 14056614  T
Q  109 aatt 112  Q
    ||||    
T  14056615 aatt 14056618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 23482055 - 23482107
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  23482055 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 23482107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 25180882 - 25181169
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25180882 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 25180980  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| ||   |||||||||||| | |||||     
T  25180981 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtatattgatcaggtttatatttttgtac 25181080  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaag 296  Q
    ||  ||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25181081 tttgatgtttagtatgatttcttaatctatgttgttgatgttgatcgtaattggaatgaaaatagaatatgatggatgaattttggaag 25181169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 10680 - 10357
Alignment:
Q  8 tgagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctga 107  Q
    ||||||| ||||||||| |||||| | |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10680 tgagaaggacttaggaactgattt-gctgtgctttttgtctttgaaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctga 10582  T
Q  108 aaattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgta 206  Q
    ||||||||||||| || |||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| || | || ||||||||| |||||||    
T  10581 aaattaatcaattgaattgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtatagggataaggtttatattgttgta 10482  T
Q  207 tttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatga 306  Q
     ||  ||| ||||||||||||||||||| |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||| | || ||||    
T  10481 ctttgatgtttagtatgatttcttaatctatgttgttgatgctgatcgtaattggaatgaaaatagaatatgatggatgaattttggaagctttgcatga 10382  T
Q  307 atgcttgattgggctgaattgatgt 331  Q
    |||||||| ||  | ||||||||||    
T  10381 atgcttgaatgaaccgaattgatgt 10357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 26885284 - 26885179
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||| ||||||||| ||||||||||||||||||||||||||| || |||| | |||||||||||    
T  26885284 gagaagaacttaggaacggattt-gatgtgctttttgtctctgcaattctaaggtaagggtgggattatctttcaataatc-taatgtataatttctgaa 26885187  T
Q  109 aattaatc 116  Q
    ||||||||    
T  26885186 aattaatc 26885179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 27207672 - 27207778
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||  |  |||| | |||||||||||    
T  27207672 gagaagaacttaggaacggattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatgattttaatgtataatttctgaa 27207770  T
Q  109 aattaatc 116  Q
    ||||||||    
T  27207771 aattaatc 27207778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 23168271 - 23168351
Alignment:
Q  29 ttttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||| |||||| ||||| | ||||||||| |||||||||||||||||||||||| |  ||||||| | |||||||||||||    
T  23168271 ttttgctgtgct-tttgtttctgcaattctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaaa 23168351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 23579528 - 23579608
Alignment:
Q  29 ttttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||| |||||| ||||| | ||||||||| |||||||||||||||||||||||| |  ||||||| | |||||||||||||    
T  23579528 ttttgctgtgct-tttgtttctgcaattctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaaa 23579608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 6483770 - 6483718
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  6483770 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 6483718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 6487237 - 6487185
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  6487237 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 6487185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 21908412 - 21908360
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| |||| |||| |||||||||||||||    
T  21908412 aggtaagggtgagactatctctcaataatcatgatatataatttctgaaaatt 21908360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 23168412 - 23168480
Alignment:
Q  166 tttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatc 234  Q
    ||||||||||||||||||||| ||| |||||   ||||||| ||  ||| | |||||||||||||||||    
T  23168412 tttgaaagaaaaggtgtaagagtcatgtttaatgtgttgtaatttgatgttcagtatgatttcttaatc 23168480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 23265195 - 23265143
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  23265195 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 23265143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 23280263 - 23280211
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  23280263 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 23280211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 23579669 - 23579737
Alignment:
Q  166 tttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatc 234  Q
    ||||||||||||||||||||| ||| |||||   ||||||| ||  ||| | |||||||||||||||||    
T  23579669 tttgaaagaaaaggtgtaagagtcatgtttaatgtgttgtaatttgatgttcagtatgatttcttaatc 23579737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 46 - 318
Target Start/End: Original strand, 9099060 - 9099333
Alignment:
Q  46 tctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa-ttaatcaattaaactgttcttaaggtaaaattgg 144  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||    
T  9099060 tctttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaaattaatcaatttaactgttcttaaggtaaaattgg 9099159  T
Q  145 gaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttg 244  Q
    |||| | ||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||    
T  9099160 gaaatttagggttaatgatgattctgaagaaaatgtgtaagaatcaggtttataatgttgtatttg-atgattagtatgatttcctaatctatattgttg 9099258  T
Q  245 atattgatcgtaa-ttgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaatgcttgattgg 318  Q
    ||||||||| ||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  9099259 atattgatcataatttggagtgaaaatagaatatgatagatgaattttggaagttctgaatgaatgtttgattgg 9099333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 20007900 - 20008205
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| | |||| | |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  20007900 gagaagaacttaggaactcattt-gctgtgct-tttgtctttgcaattctaaggtaagggtgggatcatctttcaatagtcataatatataatttatgaa 20007997  T
Q  109 aa-ttaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgattt-gaaagaaaaggtgtaagaatcaggtttataatgttgta 206  Q
    || |||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||| |||||||||||| |||| |||||||||||| |||||||    
T  20007998 aaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgta 20008097  T
Q  207 tttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatga 306  Q
     ||  ||| |||||||| |||||||||| || ||||||||  |||||||||||| |||||||||||||||||||| ||||||||| ||||   || ||||    
T  20008098 ctttgatgtttagtatgttttcttaatctatattgttgatgctgatcgtaattggaatgaaaatagaatatgatgaatgaattttagaagccttgcatga 20008197  T
Q  307 atgcttga 314  Q
    ||||||||    
T  20008198 atgcttga 20008205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 21364436 - 21364738
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||| ||||||||| ||||| |||||| ||||||||||||||||  ||||||||||||||||||| |||| || | ||||||| | |||||||||    
T  21364436 gagaagaacctaggaattg-ttttgctgtgct-tttgtctttgcaattcaaaggtaagggtgggattatccttcagtaatgataatatatgatttctgaa 21364533  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatt 208  Q
    |||||| ||||| ||||||| ||| |||||||||||| |||| ||||||||||    |||  |||||||  ||||||| | |||||||||||||||||||    
T  21364534 aattaagcaatttaactgtt-ttatggtaaaattggg-aaattagggttaatggcatttttgaagaaaatatgtaagacttaggtttataatgttgtatt 21364631  T
Q  209 tgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttttggaagttctgaatgaa 307  Q
    || ||||||| ||||||||| || ||  | |||||||| |||||| ||||||  |||||  |||||||| ||||||||| ||||| ||||||||||||||    
T  21364632 tg-atgattaatatgatttcctactctgtattgttgatgttgatcataattg-gatgaaggtagaatataatggatgaagttttgaaagttctgaatgaa 21364729  T
Q  308 tgcttgatt 316  Q
    || ||||||    
T  21364730 tgtttgatt 21364738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 23968418 - 23968720
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||| ||||||||| ||||| |||||| ||||||||||||||||  ||||||||||||||||||| |||| || | ||||||| | |||||||||    
T  23968418 gagaagaacctaggaattg-ttttgctgtgct-tttgtctttgcaattcaaaggtaagggtgggattatccttcagtaatgataatatatgatttctgaa 23968515  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatt 208  Q
    |||||| ||||| ||||||| ||| |||||||||||| |||| ||||||||||    |||  |||||||  ||||||| | |||||||||||||||||||    
T  23968516 aattaagcaatttaactgtt-ttatggtaaaattggg-aaattagggttaatggcatttttgaagaaaatatgtaagacttaggtttataatgttgtatt 23968613  T
Q  209 tgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttttggaagttctgaatgaa 307  Q
    || ||||||| ||||||||| || ||  | |||||||| |||||| ||||||  |||||  |||||||| ||||||||| ||||| ||||||||||||||    
T  23968614 tg-atgattaatatgatttcctactctgtattgttgatgttgatcataattg-gatgaaggtagaatataatggatgaagttttgaaagttctgaatgaa 23968711  T
Q  308 tgcttgatt 316  Q
    || ||||||    
T  23968712 tgtttgatt 23968720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 29097789 - 29097658
Alignment:
Q  188 tcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaa-ttgaaatgaaaatagaatatgatggatga 286  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||| ||  |||||||||||||| ||| ||||| |||||||||||||| || |||||    
T  29097789 tcaggtttatactgttgtatttga-tgattagtatgatttcctaatctataatgttgatattgatcataatttgaagtgaaaatagaatataatagatga 29097691  T
Q  287 a-ttttggaagttctgaatgaatgcttgattgg 318  Q
    | |||||||||||||||||||||| ||||||||    
T  29097690 atttttggaagttctgaatgaatgtttgattgg 29097658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 15458560 - 15458492
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | ||||||| |||||||||||||    
T  15458560 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 15465155 - 15465087
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | ||||||| |||||||||||||    
T  15465155 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15465087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 31252493 - 31252419
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||  | ||||||| |||||||||||||||||||    
T  31252493 tttgtctttgcaattctaaggtaagggtgagattatcttttaatgattataatatataatttctgaaaattaatc 31252419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 11288653 - 11288721
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    |||||||| |||||||| ||||||||||||||||||||||||||  || |||||| |||||||||||||    
T  11288653 tttgtcttggcaattctaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaa 11288721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 10986173 - 10986235
Alignment:
Q  50 tgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||| ||||||||||| || |||||||||||| ||||||| | |||||||| ||||||    
T  10986173 tgcaattctaaggtaagggtgagactatctttcaataatcataatctataatttctaaaaatt 10986235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 34639971 - 34640041
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    |||||||| |||||||| ||||||||||| || ||||| |||||| || |||| | |||||||||||||||    
T  34639971 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaatt 34640041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 34646645 - 34646715
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    |||||||| |||||||| ||||||||||| || ||||| |||||| || |||| | |||||||||||||||    
T  34646645 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaatt 34646715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 4477910 - 4477858
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  4477910 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 4477858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 23839251 - 23839199
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  23839251 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 23839199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 29614149 - 29614201
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  29614149 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 29614201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 135540 - 135224
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||| |||||||| |||||| | |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||    
T  135540 gagaagagcttaggaactgattt-gctgtgctatttgtctttgcaattctaaggtaagcgtgagattatctttcaatagtcataatatataatttctgaa 135442  T
Q  109 aattaatcaattaaactgttctt-aaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgta 206  Q
    |||||||||||| |||||||||| |||||||||||| | || |||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  135441 aattaatcaattgaactgttcttaaaggtaaaattgag-aattaagggttaatgatgattttgaaagaaaaggtgtaagaatcaggtttattgtgttgta 135343  T
Q  207 tttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatga 306  Q
     ||  ||| ||||||||||||||||||| |||||||||||  |||||  ||||| |||||||||||||||||||||||||| || ||||||| || ||||    
T  135342 atttgatg-ttagtatgatttcttaatctatgttgttgatcgtgatcaaaattggaatgaaaatagaatatgatggatgaa-ttgggaagttttgtatga 135245  T
Q  307 atgcttgattgggctgaattg 327  Q
    |||||||| ||||||||||||    
T  135244 atgcttgaatgggctgaattg 135224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 19237002 - 19236698
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19237002 gagaagaacttaggaactgattt-gctgtgctttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 19236904  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgta- 206  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| |||| |||||||||||| |||||||     
T  19236903 aattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgattttgaaagaaaaggtataaggatcaggtttatattgttgtac 19236804  T
Q  207 tttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatga 306  Q
    |||||  | ||||||||  ||||||||| |||||||||||  |||||||||||| |||||||||||| ||||||| ||||||||||||||   || ||||    
T  19236803 tttga--gtttagtatgtgttcttaatctatgttgttgatgctgatcgtaattggaatgaaaatagagtatgatgaatgaattttggaagccttgcatga 19236706  T
Q  307 atgcttga 314  Q
    ||||||||    
T  19236705 atgcttga 19236698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 20773069 - 20772764
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||| ||||||||||||||| | ||| ||  || ||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||    
T  20773069 gagaagagcttaggaattgattt-gctgtact--ttatctttgcaattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaa 20772973  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatt 208  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  20772972 aattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattttgaagaaaatgtgtaagaatcaggtttataatgttgtatt 20772873  T
Q  209 tgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttttggaagttctgaatgaa 307  Q
    || ||||||||||||||||| || || || |||||||| |||||| ||||||  |||||| |||||||| ||||||||| ||||||||||||||||||||    
T  20772872 tg-atgattagtatgatttcctactctatattgttgatgttgatcataattg-gatgaaagtagaatataatggatgaagttttggaagttctgaatgaa 20772775  T
Q  308 tgcttgattgg 318  Q
    || ||||||||    
T  20772774 tgtttgattgg 20772764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 22461258 - 22460953
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||| ||| |||||| | |||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22461258 gagaagaacttaagaactgattt-gctgtgccttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 22461160  T
Q  109 aa-ttaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    || |||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||| |||||||||||| ||| |||     
T  22461159 aaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgatttgaaagaaaaggtataaggatcaggtttatattgtcgtac 22461060  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    ||  ||| |||||||| ||||||| || |||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||   || |||||    
T  22461059 tttgatgtttagtatgttttcttattctatgttgttgatgctgatcgtaattggaatgaaaatagaatatgatgaatgaattttggaagccttgcatgaa 22460960  T
Q  308 tgcttga 314  Q
    |||||||    
T  22460959 tgcttga 22460953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 22467882 - 22467595
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    |||||||||||| ||| |||||| | |||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22467882 gagaagaacttaagaactgattt-gctgtgccttttgtctttgcaattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 22467784  T
Q  109 aa-ttaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    || |||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||| |||||||||||| ||| |||     
T  22467783 aaattaatcaattgaactgttcttaaggtaaaattgggaaatttagggttaaggatgatttgaaagaaaaggtataaggatcaggtttatattgtcgtac 22467684  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaag 296  Q
    ||  ||| |||||||| ||||||| || |||||||||||  |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  22467683 tttgatgtttagtatgttttcttattctatgttgttgatgctgatcgtaattggaatgaaaatagaatatgatgaatgaattttggaag 22467595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 20781844 - 20781539
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||| ||||||||||||||| | ||| ||  || ||||||||||||| ||||||||||||||||||||||||||| | ||||||| | |||||||||    
T  20781844 gagaagagcttaggaattgattt-gctgtact--ttatctttgcaattctaaggtaagggtgggattatctttcaataattataatatatgatttctgaa 20781748  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatt 208  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  20781747 aattaatcaatttaactgttcttaaggtaaaattgggaaatttagggttaatgatgattttgaagaaaatgtgtaagaatcaggtttataatgttgtatt 20781648  T
Q  209 tgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttttggaagttctgaatgaa 307  Q
    || ||||||| ||||||||| || || || |||||||| |||||| ||||||  |||||| |||||||| ||||||||| ||||||||||||||||||||    
T  20781647 tg-atgattattatgatttcctactctatattgttgatgttgatcataattg-gatgaaagtagaatataatggatgaagttttggaagttctgaatgaa 20781550  T
Q  308 tgcttgattgg 318  Q
    || ||||||||    
T  20781549 tgtttgattgg 20781539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 46 - 318
Target Start/End: Original strand, 24929917 - 24930190
Alignment:
Q  46 tctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa-ttaatcaattaaactgttcttaaggtaaaattgg 144  Q
    ||||| ||||||| |||||||||||||||||||||||||||||  |||||| | |||||| |||| |||||||||| |||||||||||||||||||||||    
T  24929917 tctttacaattctaaggtaagggtgggattatctttcaatagttctaatatatgatttctaaaaaattaatcaatttaactgttcttaaggtaaaattgg 24930016  T
Q  145 gaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttg 244  Q
    |||| | ||||||||||||||||   ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||  |||||    
T  24930017 gaaatttagggttaatgatgattctgaaggaaatgtgtaagaatcaggtttataatgttgtatttg-atgattagtatgatttcctaatctataatgttg 24930115  T
Q  245 atattgatcgtaa-ttgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaatgcttgattgg 318  Q
    ||||||||| ||| ||| | ||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  24930116 atattgatcataatttggagtgaaaatagaatatgatagatgaatgttggaagttctgaatgaatgtttgattgg 24930190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 28909243 - 28909558
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||| ||||||||||||| | |||||| |||||| |||||||||| ||||||||||||||| ||||||||||||| ||| ||| | |||||||||    
T  28909243 gagaagaacctaggaattgattt-gctgtgct-tttgtcgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaa 28909340  T
Q  109 aattaatcaattaaactgttcttaaggt-aaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||| | ||| || |||||||||||| |||||||||||||| ||| || ||||||||||  ||||||| | |||| | |||||||||| | |||||||    
T  28909341 aattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtat 28909440  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    || |||||||||||||||||| |||||  | | | || | |||||| ||||||  ||||||| || || | ||| |||||||| |||  ||||| |||||    
T  28909441 tt-aatgattagtatgatttcctaatctgtatcgctgttgttgatcataattg-gatgaaaagagcatgttatgtatgaatttgggattttctgtatgaa 28909538  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||| ||||||||||| ||||    
T  28909539 tgcctgattgggctggattg 28909558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 28945638 - 28945953
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||| ||||||||||||| | |||||| |||||| |||||||||| ||||||||||||||| ||||||||||||| ||| ||| | |||||||||    
T  28945638 gagaagaacctaggaattgattt-gctgtgct-tttgtcgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaa 28945735  T
Q  109 aattaatcaattaaactgttcttaaggt-aaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||| | ||| || |||||||||||| |||||||||||||| ||| || ||||||||||  ||||||| | |||| | |||||||||| | |||||||    
T  28945736 aattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtat 28945835  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    || |||||||||||||||||| |||||  | | | || | |||||| ||||||  ||||||| || || | ||| |||||||| |||  ||||| |||||    
T  28945836 tt-aatgattagtatgatttcctaatctgtatcgctgttgttgatcataattg-gatgaaaagagcatgttatgtatgaatttgggattttctgtatgaa 28945933  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||| ||||||||||| ||||    
T  28945934 tgcctgattgggctggattg 28945953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 28895995 - 28896310
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||| ||||||||||||| | |||||| |||| | |||||||||| ||||||||||||||| ||||||||||||| ||| ||| | |||||||||    
T  28895995 gagaagaacctaggaattgattt-gctgtgct-tttgccgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaa 28896092  T
Q  109 aattaatcaattaaactgttcttaaggt-aaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||| | ||| || |||||||||||| |||||||||||||| ||| || ||||||||||  ||||||| | |||| | |||||||||| | |||||||    
T  28896093 aattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtat 28896192  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    || |||||||||||||||||| |||||  | | | || | |||||| ||||||  ||||||| || || | ||| |||||||| |||  ||||| |||||    
T  28896193 tt-aatgattagtatgatttcctaatctgtatcgctgttgttgatcataattg-gatgaaaagagcatgttatgtatgaatttgggattttctgtatgaa 28896290  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||| ||||||||||| ||||    
T  28896291 tgcctgattgggctggattg 28896310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 28924821 - 28925136
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||| ||||||||||||| | |||||| |||| | |||||||||| ||||||||||||||| ||||||||||||| ||| ||| | |||||||||    
T  28924821 gagaagaacctaggaattgattt-gctgtgct-tttgccgttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaa 28924918  T
Q  109 aattaatcaattaaactgttcttaaggt-aaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtat 207  Q
    |||||| | ||| || |||||||||||| |||||||||||||| ||| || ||||||||||  ||||||| | |||| | |||||||||| | |||||||    
T  28924919 aattaaactatttaattgttcttaaggtaaaaattgggaaaattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtat 28925018  T
Q  208 ttgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaa 307  Q
    || |||||||||||||||||| |||||  | | | || | |||||| ||||||  ||||||| || || | ||| |||||||| |||  ||||| |||||    
T  28925019 tt-aatgattagtatgatttcctaatctgtatcgctgttgttgatcataattg-gatgaaaagagcatgttatgtatgaatttgggattttctgtatgaa 28925116  T
Q  308 tgcttgattgggctgaattg 327  Q
    ||| ||||||||||| ||||    
T  28925117 tgcctgattgggctggattg 28925136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 49 - 327
Target Start/End: Original strand, 28889329 - 28889606
Alignment:
Q  49 ttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggt-aaaattgggaa 147  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||| ||| | ||||||||||||||| | ||| || |||||||||||| |||||||||||    
T  28889329 ttgcaattctaaggtaagggtgggatcatctttcaatagtgatattatatgatttctgaaaattaaactatttaattgttcttaaggtaaaaattgggaa 28889428  T
Q  148 aataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgata 247  Q
    ||| ||| || ||||||||||  ||||||| | |||| | |||||||||| | ||||||||| |||||||||||||||||| |||||  | | | || |     
T  28889429 aattaggtttgatgatgattttgaagaaaatgcgtaaaattcaggtttatgacgttgtattt-aatgattagtatgatttcctaatctgtatcgctgttg 28889527  T
Q  248 ttgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaatgcttgattgggctgaattg 327  Q
    |||||| ||||||  ||||||| || || | ||| |||||||| |||  ||||| |||||||| ||||||||||| ||||    
T  28889528 ttgatcataattg-gatgaaaagagcatgttatgtatgaatttgggattttctgtatgaatgcctgattgggctggattg 28889606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 225
Target Start/End: Complemental strand, 20820279 - 20820105
Alignment:
Q  49 ttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggtaaaattgggaaa 148  Q
    |||||||||| ||||||||||||||| |||||||||||||  |||||| ||||||||||  |||||  |||| ||| ||||||||||||||||| |||||    
T  20820279 ttgcaattctaaggtaagggtgggatcatctttcaatagtgttaatatataatttctgatgattaagtaattcaaccgttcttaaggtaaaatt-ggaaa 20820181  T
Q  149 ataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgat 225  Q
    || |||||||||||||||||  |||| || |  ||||| ||||||||||||||||||||||| ||||| ||||||||    
T  20820180 attagggttaatgatgattttgaagagaatgcataagattcaggtttataatgttgtatttg-atgatgagtatgat 20820105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 225
Target Start/End: Complemental strand, 20827379 - 20827205
Alignment:
Q  49 ttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggtaaaattgggaaa 148  Q
    |||||||||| ||||||||||||||| |||||||||||||  |||||| ||||||||||  |||||  |||| ||| ||||||||||||||||| |||||    
T  20827379 ttgcaattctaaggtaagggtgggatcatctttcaatagtgttaatatataatttctgatgattaagtaattcaaccgttcttaaggtaaaatt-ggaaa 20827281  T
Q  149 ataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgat 225  Q
    || |||||||||||||||||  |||| || |  ||||| ||||||||||||||||||||||| ||||| ||||||||    
T  20827280 attagggttaatgatgattttgaagagaatgcataagattcaggtttataatgttgtatttg-atgatgagtatgat 20827205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 327
Target Start/End: Original strand, 28931061 - 28931250
Alignment:
Q  137 aaaattgggaaaataagggttaatgatgatttga-aagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatcc 235  Q
    |||||||||||||| ||| || |||||| |||   ||||||| | |||| | |||||||||| | ||||||||| |||||||||||||||||| |||||     
T  28931061 aaaattgggaaaattaggtttgatgatggtttttgaagaaaatgggtaaaattcaggtttatgacgttgtattt-aatgattagtatgatttcctaatct 28931159  T
Q  236 atgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaatgcttgattgggctgaattg 327  Q
     | | | || | |||||| ||||||  ||||||| || || | ||| |||||||| |||  ||||| |||||||| ||||||||||| ||||    
T  28931160 gtatcgctgttgttgatcataattg-gatgaaaagagcatgttatgtatgaatttgggattttctgtatgaatgcctgattgggctggattg 28931250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 18407946 - 18408084
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc-aattaaactgttctt--aaggtaaaattgggaaaataagggt 156  Q
    ||||||||||| || ||||| |||||| ||||||||| ||||||||||||||| ||| |||| || |||||||  ||   |||||||||  ||| |||||    
T  18407946 aggtaagggtgagactatctctcaataatcataatatataatttctgaaaattgatctaattgaattgttcttgaaaataaaaattggg--aattagggt 18408043  T
Q  157 taatgatga-tttgaaagaaaaggtgtaagaatcaggttta 196  Q
    | ||| ||| |||||||| || ||||||||||||| |||||    
T  18408044 tgatgctgattttgaaaggaatggtgtaagaatcatgttta 18408084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 34830146 - 34830081
Alignment:
Q  50 tgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||||| ||||||||||||||||||||||||||| |  |||| | |||||||||||||| ||||    
T  34830146 tgcaattctaaggtaagggtgggattatctttcaataat-ttaatgtataatttctgaaaatcaatc 34830081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 19512439 - 19512387
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  19512439 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 19512387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 22438750 - 22438802
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  22438750 aggtaagggtgagactatctctcaataatcataatgtataatttctgaaaatt 22438802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 23111202 - 23111254
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  23111202 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 23111254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 28370057 - 28370109
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  28370057 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 28370109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 38144539 - 38144591
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  38144539 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 38144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 52 - 327
Target Start/End: Complemental strand, 9396 - 9121
Alignment:
Q  52 caattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttctt-aaggtaaaattgggaaaat 150  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||| || |    
T  9396 caattctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaattaatcaattgaactgttcttaaaagtaaaattggg-aatt 9298  T
Q  151 aagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatatt 249  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||  ||||||| ||  ||| |||||||||||||| |||| |||||||||||  |    
T  9297 aagggttaatgatgattttgaaagaaaaggtgtaagaattaggtttattgtgttgtaatttgatgtttagtatgatttctcaatctatgttgttgattgt 9198  T
Q  250 gatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaatgcttgattgggctgaattg 327  Q
    ||||  ||||| || ||||||||||||||||||||||| || ||||||| || |||| ||||||| ||||||||||||    
T  9197 gatcagaattggaacgaaaatagaatatgatggatgaa-ttgggaagttttgtatgattgcttgaatgggctgaattg 9121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 52 - 309
Target Start/End: Original strand, 16059 - 16316
Alignment:
Q  52 caattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctg-aaaattaatcaattaaactgttcttaaggtaaaattgggaaaat 150  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||||||| ||||||| ||||| ||||| | || || |    
T  16059 caattctaaggtaagggtgggattatctttcaatagttataatatatgatttctgaaaaattaatcaatttaactgtttttaagataaaaattgg-aatt 16157  T
Q  151 aagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatattg 250  Q
     |||||||||||||||||  ||||||| ||| |||||||||||| || |||||||||||| ||||||||||||||||  ||||| || ||||| ||||||    
T  16158 tagggttaatgatgattttgaagaaaatgtgcaagaatcaggttcatgatgttgtatttg-atgattagtatgattttctaatctatattgttcatattg 16256  T
Q  251 atcgtaattgaaatg-aaaatagaatatgatggatgaattttggaagttctgaatgaatg 309  Q
    ||| |||||||| || ||||||||||||||| || || ||||||||||||||||||||||    
T  16257 atcataattgaagtgaaaaatagaatatgatagaagagttttggaagttctgaatgaatg 16316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 1865 - 2062
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1865 gagaagaacttaggaacggattt-gctgtgctttttgtctttgcaattgtaaggtaagggtgggattatctttcaatagtcataatatataatttctgaa 1963  T
Q  109 aattaatcaattaaactgttctt-aaggtaaaattgggaaaataagggttaatgatga-tttgaaagaaaaggtgtaagaatcaggtttataatgttgta 206  Q
    |||||||||||| |||||||||| || ||||||||||| || |||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  1964 aattaatcaattgaactgttcttgaaagtaaaattggg-aattaagggttaatgatgattttgaaagaaaaggtgtaagaattaggtttattgtgttgta 2062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 327
Target Start/End: Complemental strand, 1425 - 1142
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggtaaaat 141  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||||  |||||| |  |||||||||||||| ||||| ||||||||||||||||||||    
T  1425 tttgtctttgcaattctaaggtaagggtgggatttcctttcaatagtgttaatatatgctttctgaaaattaaacaatttaactgttcttaaggtaaaat 1326  T
Q  142 tgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttg 241  Q
    ||||||||| |||  ||||||||||||  ||||||| | |||||| ||||||||| |||||| || ||| ||||||||||||||||| |||||  | |||    
T  1325 tgggaaaattaggtctaatgatgattttgaagaaaatgcgtaagattcaggtttacaatgttataattg-atgattagtatgatttcctaatctgtattg 1227  T
Q  242 ttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaag-ttctgaatgaatgcttgattgggctgaattg 327  Q
    ||| | |||||| ||||||  |||||||||| || | |||  |||| |||||||| ||||| |||||||||||||||||||||||||    
T  1226 ttgttgttgatcataattg-gatgaaaatagcatgttatgtgtgaa-tttggaagtttctgtatgaatgcttgattgggctgaattg 1142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 1098 - 784
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||| ||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||| |||| |||||||| ||||||| | |||||||||    
T  1098 gagaagaacctaggaattgattt-gctgtgct-tttgtctttgcaattctaaggtaagggtgggatcatctctcaatagtgataatatatgatttctgaa 1001  T
Q  109 aattaatcaattaaactgttcttaaggtaaaattgggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatt 208  Q
    |||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||  |||||  ||||||| |||||||| | |||||||||| ||||| ||    
T  1000 aattaagcaatttaactgttcttatggtaaaattgggaaaattagggttaatggcgattttgaagaaaatgtgtaagatttaggtttataaagttgtgtt 901  T
Q  209 tgaatgattagtatgatttcttaatccatgttgttgatattgatcgtaattgaaatgaaaatagaatatgatggatgaattttggaagttctgaatgaat 308  Q
    || |||||||||| || ||    ||| ||  ||||| | |||||| ||||||  |||||||||| || | ||| |||||||| |||  ||||| || |||    
T  900 tg-atgattagtaagagtttccgatctataatgttgttgttgatcataattg-gatgaaaatagcatgttatgtatgaatttgggattttctgtattaat 803  T
Q  309 gcttgattgggctgaattg 327  Q
    |||||||||||||| ||||    
T  802 gcttgattgggctggattg 784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 316
Target Start/End: Original strand, 91191 - 91462
Alignment:
Q  46 tctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggt---aaaatt 142  Q
    ||||||||||||| ||||||||||||||| ||||||||||| | ||||||| | ||||||||||||||| ||||| ||||||| ||| |||   ||||||    
T  91191 tctttgcaattctaaggtaagggtgggatcatctttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaatt 91290  T
Q  143 gggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgt 242  Q
    ||| |||| ||||||||||   ||||  ||||||| |||||||| | ||||||||||||||||||||| ||||||| ||||||||| || ||  | |||     
T  91291 ggg-aaattagggttaatggcaattttgaagaaaatgtgtaagatttaggtttataatgttgtatttg-atgattaatatgatttcctactctgtattgg 91388  T
Q  243 tgatattgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttttggaagttctgaatgaatgcttgatt 316  Q
    |||| |||||| ||||||  |||||  |||||||| ||||||||| ||||| |||||||||||||||| ||||||    
T  91389 tgatgttgatcataattg-gatgaaggtagaatataatggatgaagttttgaaagttctgaatgaatgtttgatt 91462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 46 - 316
Target Start/End: Original strand, 96917 - 97188
Alignment:
Q  46 tctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatcaattaaactgttcttaaggt---aaaatt 142  Q
    ||||||||||||| ||||||||||||||| ||||||||||| | ||||||| | ||||||||||||||| ||||| ||||||| ||| |||   ||||||    
T  96917 tctttgcaattctaaggtaagggtgggatcatctttcaataatgataatatatgatttctgaaaattaagcaatttaactgtttttatggtaaaaaaatt 97016  T
Q  143 gggaaaataagggttaatgatgatttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgt 242  Q
    ||| |||| ||||||||||   ||||  ||||||| |||||||| | ||||||||||||||||||||| ||||||| ||||||||| || ||  | |||     
T  97017 ggg-aaattagggttaatggcaattttgaagaaaatgtgtaagatttaggtttataatgttgtatttg-atgattaatatgatttcctactctgtattgg 97114  T
Q  243 tgatattgatcgtaattgaaatgaaaatagaatatgatggatgaa-ttttggaagttctgaatgaatgcttgatt 316  Q
    |||| |||||| ||||||  |||||  |||||||| ||||||||| ||||| |||||||||||||||| ||||||    
T  97115 tgatgttgatcataattg-gatgaaggtagaatataatggatgaagttttgaaagttctgaatgaatgtttgatt 97188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 10341 - 10222
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||| | ||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||    
T  10341 gagaagaacttaggaacggattt-gctgtgctttttgtctctacaattctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaa 10243  T
Q  109 aattaatcaattaaactgttc 129  Q
    |||||||||||| || |||||    
T  10242 aattaatcaattgaattgttc 10222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 5842 - 5916
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | ||||||| |||||||||||||||||||    
T  5842 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaattaatc 5916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 60 - 309
Target Start/End: Complemental strand, 13018 - 12753
Alignment:
Q  60 aggtaagggtgggattatcttt-caatagtcataatatgtaatttctgaaaa-ttaatcaa---ttaaactgttcttaa-ggtaaaatt--gggaaaata 151  Q
    |||||||||||||||||||||| |||||||  |||||| | |||||| |||| |||||| |   || |||||||||||| ||||||| |  |||||| |     
T  13018 aggtaagggtgggattatctttacaatagttctaatatatgatttctaaaaaattaatctaaattttaactgttcttaaaggtaaaaattggggaaattt 12919  T
Q  152 agggttaatg-atgatttgaaagaaaaggtgt-aagaatc-aggtttataatgttgtatttgaatgattagtatgatttcttaatccatgttgttgatat 248  Q
    |||||||||| ||||||   ||| ||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||  |||||||||    
T  12918 agggttaatgtatgattctgaaggaaatgtgttaagaatctaggtttataatgttgtatttgtatgattagtatgatttcctaatctataatgttgatat 12819  T
Q  249 tgatcgt--aattgaaatg-aaaatagaatatgatggatgaat-tttggaa-gttctgaatgaatg 309  Q
    ||||| |  | ||| | || ||||||||||||||| |||||||  |||||| ||||||||||||||    
T  12818 tgatcattaatttggagtgaaaaatagaatatgatagatgaatggttggaaggttctgaatgaatg 12753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 492981 - 493086
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||| ||||||||| ||||||||||| ||||||||||||||| || |||| | |||||||||||    
T  492981 gagaagaacttaggaacggattt-gctgtgctttttgtctctgcaattctaaggtaagggtgagattatctttcaataatc-taatgtataatttctgaa 493078  T
Q  109 aattaatc 116  Q
    ||||||||    
T  493079 aattaatc 493086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 13879 - 13947
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  | ||||||| |||||||||||||    
T  13879 tttgtctttgcaattctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 13947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 10148 - 10250
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||| | ||||||| |||||||||||||| ||||| |||||| ||||||| | |||||||||||    
T  10148 gagaagaacttaggaacggattt-gctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatctataatttctgaa 10246  T
Q  109 aatt 112  Q
    ||||    
T  10247 aatt 10250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 1478 - 1580
Alignment:
Q  9 gagaagaacttaggaattgattttgttgtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaa 108  Q
    ||||||||||||||||  ||||| | |||||| ||||||| | ||||||| |||||||||||||| ||||| |||||| ||||||| | |||||||||||    
T  1478 gagaagaacttaggaacggattt-gctgtgctttttgtctatacaattctaaggtaagggtgggactatctctcaataatcataatctataatttctgaa 1576  T
Q  109 aatt 112  Q
    ||||    
T  1577 aatt 1580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 70 - 6
Alignment:
Q  46 tctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||  |||||| | |||||||||||    
T  70 tctttgcaattctaaggtaagggtgggattatctttcaatagttctaatatatgatttctgaaaa 6  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 23562 - 23628
Alignment:
Q  50 tgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||||| |||||||||||||||||||||| |||  ||||||| | |||||||||||||||||||    
T  23562 tgcaattctaaggtaagggtgggattatctttgaatgatcataatgtataatttctgaaaattaatc 23628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 23680 - 23748
Alignment:
Q  166 tttgaaagaaaaggtgtaagaatcaggtttataatgttgtatttgaatgattagtatgatttcttaatc 234  Q
    ||||||||||||| ||||||||||| |||||   ||||||| ||  ||| | |||||||||||||||||    
T  23680 tttgaaagaaaagatgtaagaatcatgtttaatgtgttgtaatttgatgttcagtatgatttcttaatc 23748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 73347 - 73281
Alignment:
Q  50 tgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||| | |||||| ||||||||||||    
T  73347 tgcaattatgaggtaagggtgggattatctttcaatgatcataatgtataatttatgaaaattaatc 73281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 3381 - 3461
Alignment:
Q  36 gtgctatttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||| ||||||||||||||||| |||||||||||  |||||||||||||     |||||| |||||||||||||||||||    
T  3381 gtgctttttgtctttgcaattctaaggtaagggtgatattatctttcaatgaatttaatatataatttctgaaaattaatc 3461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 111756 - 111686
Alignment:
Q  42 tttgtctttgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    |||||||| |||||||| ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  111756 tttgtcttcgcaattctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 111686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 11853 - 11905
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  11853 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 11905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 10546 - 10609
Alignment:
Q  53 aattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    |||||| ||||||| ||||||||||||||||||  || |||| | |||||||||||||||||||    
T  10546 aattctaaggtaagtgtgggattatctttcaatgatcttaatgtataatttctgaaaattaatc 10609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 767 - 717
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaa 110  Q
    ||||||||||||||||||||||||||  || |||||| |||||||||||||    
T  767 aggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaa 717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1461 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 1487 - 1543
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc 116  Q
    ||||||||||| ||||||||| ||||  || ||||||| ||||||||||||||||||    
T  1487 aggtaagggtgagattatcttgcaatgatcttaatatgcaatttctgaaaattaatc 1543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 40524 - 40586
Alignment:
Q  50 tgcaattctgaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||| ||| ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  40524 tgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 40586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 753 - 805
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  753 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 1439 - 1367
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaattaatc-aattaaactgttctt 131  Q
    ||||||||||| || |||||||||||  |||| |||| |||||| |||||||| ||| ||||||| |||||||    
T  1439 aggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaattaaattgttctt 1367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 11394 - 11342
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  11394 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 11342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 16873 - 16821
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  16873 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 16821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 30910 - 30858
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  30910 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 30858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 14398 - 14450
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  14398 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 14450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 135526 - 135474
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  135526 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 135474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 116949 - 116897
Alignment:
Q  60 aggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 112  Q
    ||||||||||| || ||||| |||||| ||||| ||| |||||||||||||||    
T  116949 aggtaagggtgagactatctctcaataatcatagtatataatttctgaaaatt 116897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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