View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_low_16 (Length: 307)
Name: NF7798_low_16
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 41081077 - 41081347
Alignment:
| Q |
18 |
ttaaccaatcaaaatcatagcatatcccttaccaattaatatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatgg |
117 |
Q |
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| T |
41081077 |
ttaaccaatcaaaatcatagcatatcccttaccaat----atggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatgg |
41081172 |
T |
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| Q |
118 |
tggcttaggcaattgagaccttagttatgtcatattgtcttgctcaggattggtagaaataagtgattggagctgcaagattcatggaacctcaatgtgc |
217 |
Q |
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| T |
41081173 |
tggcttaggcaattgagacctttgttatgtcatattgtcttgctcaggattggtagaaataagtgattggagctgcaagattcatggaacctcaatgtgc |
41081272 |
T |
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| Q |
218 |
aagaatgagaattttctttgacgcgtagaagatttggttttggaactgcattggtgtttgtattttctgattcat |
292 |
Q |
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| T |
41081273 |
aagaatgagaattttctttgacgcgtaaaagatttggttttggaactgcattggtgtttgtattttctgattcat |
41081347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 41089087 - 41089251
Alignment:
| Q |
18 |
ttaaccaatcaaaatcatagcatatcccttaccaattaatatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatgg |
117 |
Q |
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| T |
41089087 |
ttaacgaatctaaatcatagcttatcccttaccatt----atggttctagtcatgcataatgttaaaactacctttagattggtctttcgttatctatgg |
41089182 |
T |
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| Q |
118 |
tggcttaggcaattgagaccttagttatgtcatattgtcttgctcaggattggtagaaataagtgattg |
186 |
Q |
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| T |
41089183 |
tggcttaggcaattgagactttagttatgtcatattgtcttgcttaggattggtagaaatatgtgattg |
41089251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 41103462 - 41103642
Alignment:
| Q |
18 |
ttaaccaatcaaaatcatagcatatcccttaccaattaatatggttctactcatgcctaatgttaaaactaactttagattggtctttcattatctatgg |
117 |
Q |
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||||||||| ||||||||||| ||||| |||||||| ||| |||||||||||| ||||||| |||||| ||||| ||||| ||||| |||||||||| |
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| T |
41103462 |
ttaaccaattaaaatcatagcttatccgttaccaat----atgattctactcatgcataatgttgaaactacctttaaattggcctttcgttatctatgg |
41103557 |
T |
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| Q |
118 |
tggctt-------------aggcaattgagaccttagttatgtcatattgtcttgctcaggattggtagaaataagtgattggag |
189 |
Q |
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| T |
41103558 |
tggcttgctgtgtataataaggcaattgagaccttagtaaagttatactgtcttgcttaggattggtcgaaataagtgattggag |
41103642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 41089292 - 41089359
Alignment:
| Q |
196 |
gattcatggaacctcaatgtgcaagaatgagaattttct-ttgacgcgtagaagatttggttttggaa |
262 |
Q |
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| T |
41089292 |
gattcatgtgaccttaatatgcaagaatgagaattttttgttgaggcgtagaagatttggttttggaa |
41089359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 41103664 - 41103707
Alignment:
| Q |
183 |
attggagctgcaagattcatggaacctcaatgtgcaagaatgag |
226 |
Q |
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| T |
41103664 |
attggagctgcaagattcatgggacctcaatgtgcaacaatgag |
41103707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 4132286 - 4132197
Alignment:
| Q |
183 |
attggagctgcaagattcatggaacctcaatgtgcaagaatgagaattttctttgacgcgtagaagatttggttttggaactgcattggt |
272 |
Q |
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| T |
4132286 |
attggagctacatgattcatgggacctcaatatgcagcaatgagactttttgttgaggcgtagaagatttggttttggaactgtattggt |
4132197 |
T |
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