View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_low_17 (Length: 302)
Name: NF7798_low_17
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11903086 - 11903375
Alignment:
| Q |
1 |
gctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgcttaatctcaattcgcaaatca |
100 |
Q |
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| T |
11903086 |
gctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgcttaatctcaattcgcaaatca |
11903185 |
T |
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| Q |
101 |
tcgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaaggtttcatggagagaacggatcc |
200 |
Q |
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| T |
11903186 |
tcgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaaggtttcatggagagaacggatcc |
11903285 |
T |
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| Q |
201 |
aaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaa |
290 |
Q |
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| T |
11903286 |
aaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaa |
11903375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 11731116 - 11730830
Alignment:
| Q |
1 |
gctacgtgtagtgatgagtattgcccaactggtaccgccagattcagttaatttcttttgcaacttttcaagatcatgcttaatctcaattcgcaaatca |
100 |
Q |
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| T |
11731116 |
gctacgtgtagtgatgagtattgcacaaccggtaccacaagactcctttaatcgttgctgcaacttctcgagatcattcttaatctcatttctcaaatca |
11731017 |
T |
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| Q |
101 |
tcgagcacaagtaggcggcgtacacttccatcaatgactgtggtcatagctaagttagcaatgtattccacatcaaaggtttcatggagagaacggatcc |
200 |
Q |
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| T |
11731016 |
tcaagcacgattaggcagtgtttaccatcatcaa---cagtggtggtagctgacttaactatggattccacatcaaaggtctcgtgtagaagatcgatcc |
11730920 |
T |
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| Q |
201 |
aaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaa |
290 |
Q |
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| T |
11730919 |
aaattggttgtagcccaaaatttgctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaa |
11730830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 11859234 - 11859140
Alignment:
| Q |
196 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaa |
290 |
Q |
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| T |
11859234 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaa |
11859140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 11827061 - 11826972
Alignment:
| Q |
201 |
aaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaa |
290 |
Q |
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||||| ||||||| |||||| ||||||||||| || || || ||||| ||| ||||||||||||||||||||||||| |||||||| |
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| T |
11827061 |
aaatttgttcgaattcaaaattcgctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaa |
11826972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 11730461 - 11730386
Alignment:
| Q |
215 |
ccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaa |
290 |
Q |
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||||||| ||||||||||| ||||| | ||||||||||| |||||||||||| || || ||||| | |||||||| |
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| T |
11730461 |
ccaaaatttgctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaa |
11730386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 12038032 - 12037938
Alignment:
| Q |
196 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaa |
290 |
Q |
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|||||||||||||| || ||||||| || |||||| ||||| || ||||| ||| |||||||||||||| ||||||||||||||||||| |
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| T |
12038032 |
gatccaaattggttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaa |
12037938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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