View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_low_2 (Length: 737)
Name: NF7798_low_2
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Complemental strand, 43696689 - 43696246
Alignment:
| Q |
13 |
aatatgtatatagatccatgtggataagtatagttagttagcattttcctaagtataattagtgtaacattgaaattaatgaactaattaagccggagta |
112 |
Q |
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| T |
43696689 |
aatatgtatatagatccatgtggataagtatagttagttagcattttcctaagtataattagtgtaacattgaaattaatgaactaattaagctggagta |
43696590 |
T |
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| Q |
113 |
tattattattaagcgaggcaggatccgttgacaaaatagaagcaggtgatgcaacacaagccaattgaaaaaacgagcatgttcaccgtcgtcatcaaca |
212 |
Q |
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| T |
43696589 |
tattattattaagcgaggcaggatccgttgacaaaatagaagcaggtgatgcaacacaagccaattgaaaaaacgagcatgttcaccgtcgtcatcaaca |
43696490 |
T |
|
| Q |
213 |
ggtgactaatcatactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcattaag |
312 |
Q |
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| T |
43696489 |
ggtgactaatcatactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcattaag |
43696390 |
T |
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| Q |
313 |
ttaattttatatccataagtggaaaggtgggaaataatagaaaaagtaaatctgtcccattgtgacctgaatgaagctgaatcaaatgtataatatatag |
412 |
Q |
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| T |
43696389 |
ttaattttatatccataagtggaaaggtgggaaataatagaaaaagtaaatctgtcccattgtgacctgaatgaagctgaatcaaatgtata----atag |
43696294 |
T |
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| Q |
413 |
tgcaaagatgggacatgctttctagcattattggactctatgagctca |
460 |
Q |
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| T |
43696293 |
tgcaaagatgggacatgctttctagcattattggactctatgagctca |
43696246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 458 - 721
Target Start/End: Complemental strand, 43696219 - 43695956
Alignment:
| Q |
458 |
tcattgtattaaataaaaggttcnnnnnnnctatctacaggttggtccatgtgataatggttcatttaaaatatgtctcagattgaggaatatgacaagg |
557 |
Q |
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| T |
43696219 |
tcattgtattaaataaaaggttctttttttctatacacaggttggtccatgtgataatggttcatttaaaatatgtctcagattgaggaatatgacaagg |
43696120 |
T |
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| Q |
558 |
acaagggcaaagacatttgttggaagagtgtcagtcacatgaacttttcttatgcggcgataaaaataaatagtgatgccatggtgtttcactgattcat |
657 |
Q |
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| T |
43696119 |
acaagggcaaagacatttgttggaagagtgtcagtcacatgagcttttcttatgcggcgataaaaataaatagtgatgccatggtgtttcactgattcat |
43696020 |
T |
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| Q |
658 |
atgcttttatttggatttgtgttgtgtgcaatcactaccaccatgtttggtttagagaagaaaa |
721 |
Q |
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| T |
43696019 |
gtgcttttatttggatttgtgctgtgtgcaatcactaccaccatgtttggtttagagaagaaaa |
43695956 |
T |
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