View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7798_low_21 (Length: 252)
Name: NF7798_low_21
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7798_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 39047751 - 39047869
Alignment:
| Q |
22 |
attatatatattgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaaccactcacagt |
121 |
Q |
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| T |
39047751 |
attatatatattgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaaccactcacagt |
39047850 |
T |
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| Q |
122 |
aagattatactacctccaa |
140 |
Q |
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| T |
39047851 |
aagattatactacctccaa |
39047869 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 39235421 - 39235520
Alignment:
| Q |
32 |
ttgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaaccactcacagtaagattatac |
131 |
Q |
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| T |
39235421 |
ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgacagaaaaacaccctcggtaagatcatac |
39235520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 39292605 - 39292542
Alignment:
| Q |
30 |
tattgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagctt |
93 |
Q |
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| T |
39292605 |
tattgtgcagtatatacttgaaacaagcgtgtttccaagagaacacccatgcttgaaggagctt |
39292542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 39053763 - 39053841
Alignment:
| Q |
32 |
ttgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaa |
110 |
Q |
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| T |
39053763 |
ttgtgcagtatatacttgacacaagtgtgtttccaaatgaacacccttgcttgaaggagcttcgtgagatgacagaaaa |
39053841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 7562764 - 7562863
Alignment:
| Q |
32 |
ttgtgcagtatatacttgagaccagtgtgtttccaagagagcacccatgcttgaaggagcttcgtgagttaacagaaaaccactcacagtaagattatac |
131 |
Q |
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| T |
7562764 |
ttgtgcagtatatacttgacacaagtgtgtttccaagagaacacccttgcttgaaggagctccgtgagatgacagaaaaacaccctcggtaagatcatac |
7562863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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