View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7798_low_22 (Length: 250)

Name: NF7798_low_22
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7798_low_22
NF7798_low_22
[»] chr7 (13 HSPs)
chr7 (10-250)||(4652779-4653019)
chr7 (10-250)||(4642963-4643203)
chr7 (10-250)||(4666194-4666434)
chr7 (10-236)||(4630168-4630394)
chr7 (10-250)||(4671899-4672139)
chr7 (15-250)||(4661068-4661303)
chr7 (10-250)||(4636116-4636356)
chr7 (24-250)||(4712683-4712909)
chr7 (54-250)||(4863192-4863388)
chr7 (13-250)||(4816881-4817118)
chr7 (13-250)||(4784452-4784689)
chr7 (13-250)||(4846638-4846875)
chr7 (54-250)||(4697807-4698003)
[»] chr4 (1 HSPs)
chr4 (13-250)||(18926356-18926593)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 4652779 - 4653019
Alignment:
Q  10 cgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4652779 cgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactc 4652878  T
Q  110 gatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4652879 gatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttg 4652978  T
Q  210 ccaaatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4652979 ccaaatcctccaacaccgatgatgaaaacatcatcgaagtt 4653019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 4642963 - 4643203
Alignment:
Q  10 cgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactt 109  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  4642963 cgtgctgcatgaactcataaaccaaaatcatctctgtgtcatcgttgcaatatcccacgagggacaccaagtgaatgtggcgaagctgggagagcaactc 4643062  T
Q  110 gatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttg 209  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||| || | ||||||| |  |||||||||| |  ||||||||||||||||||    
T  4643063 gatttcattcatgaactcgttggcaccttgttgagagcccgatttgaggcgcttaaccgcaacaagtgtggatccatcaacacaacctttgtacacgttg 4643162  T
Q  210 ccaaatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    ||||| |||||||| |||||||| ||| |||||||||||||    
T  4643163 ccaaaccctccaactccgatgataaaagcatcatcgaagtt 4643203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 4666194 - 4666434
Alignment:
Q  10 cgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactt 109  Q
    |||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |     
T  4666194 cgtgctgcatgaactcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaattc 4666293  T
Q  110 gatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttg 209  Q
    ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||    
T  4666294 gatttcgttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatggcaacaagtgtggatccatcgacacaacctttgtacacgttg 4666393  T
Q  210 ccaaatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    ||||| |||||||| |||||||||||| |||| || |||||    
T  4666394 ccaaaccctccaactccgatgatgaaatcatcgtcaaagtt 4666434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 4630168 - 4630394
Alignment:
Q  10 cgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactt 109  Q
    |||| ||||||||||||||||||| |||||| |||||||  |||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||     
T  4630168 cgtgctgcatgaactcataaaccagaatcatctctgtgttgtcattgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaactc 4630267  T
Q  110 gatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttg 209  Q
    ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||     
T  4630268 gatttcgttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatcgcaacaggtgtggatccatcgacacaacctttgtacacgttc 4630367  T
Q  210 ccaaatcctccaacaccgatgatgaaa 236  Q
    ||||| |||||||  ||||||||||||    
T  4630368 ccaaaccctccaaatccgatgatgaaa 4630394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 4671899 - 4672139
Alignment:
Q  10 cgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactt 109  Q
    |||| ||||| ||||| |||||||||||||| | ||||||||| | ||||||||| ||||||||||||||||||||||||||||| || ||||||||||     
T  4671899 cgtgctgcataaactcgtaaaccaaaatcatctatgtgtcatcgtcgcaatatccaacgagggataccaagtgaatgtggcgaagttgagagagtaactc 4671998  T
Q  110 gatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttg 209  Q
    ||| || ||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||| |  ||||||||||||  ||||||||||||| |||     
T  4671999 gatttcgttcatgaactcgttggcaccttgctgagagcccgatttgagccgttttatggcaacaagtgtggatccatcgacacaacctttgtacaggttt 4672098  T
Q  210 ccaaatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    ||||| |||||||| ||||||||  || |||||||||||||    
T  4672099 ccaaaccctccaactccgatgatagaagcatcatcgaagtt 4672139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 4661068 - 4661303
Alignment:
Q  15 tgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaacttgatct 114  Q
    |||||||| |||||||||| |||||| | |||||  ||||| |||||||||| |||||| ||||| ||||||||||||||||||||||| |||| ||| |    
T  4661068 tgcatgaattcataaaccagaatcatctatgtgttgtcattacaatatcccatgagggacaccaaatgaatgtggcgaagctgggagagcaactcgattt 4661167  T
Q  115 cattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgccaaa 214  Q
    | ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |  | |||||||| |  |||||||||||||||||||||||    
T  4661168 cgttcatgaactcgttgacaccttgttgagagcccgatttgaggcgtttaatcgcaacaagtgttgatccatcaacacaacctttgtacacgttgccaaa 4661267  T
Q  215 tcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
     |||||||| || ||||||||| ||||||| |||||    
T  4661268 ccctccaactccaatgatgaaatcatcatcaaagtt 4661303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 4636116 - 4636356
Alignment:
Q  10 cgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactt 109  Q
    |||| |||||||||||||| |||| |||||| ||||| |  || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||     
T  4636116 cgtgctgcatgaactcatagaccagaatcatctctgtcttgtcgttgcaatatcccacaagggataccaagtgaatgtggcgaagctgggagagcaactc 4636215  T
Q  110 gatctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttg 209  Q
    |||||| ||||||||||| || ||||||||||||||||| ||  ||||||||||||||||||| ||  |||||||||| ||| ||||||||||||| ||     
T  4636216 gatctcgttcatgaactcatttgcaccttgttgagagcccgacctgaggcgttttatcgcaacgggtgtggatccatcaatgaaacctttgtacacattc 4636315  T
Q  210 ccaaatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    ||||| || ||||||||||| |||    |||||||||||||    
T  4636316 ccaaaccccccaacaccgataatgttttcatcatcgaagtt 4636356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 4712909 - 4712683
Alignment:
Q  24 tcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaacttgatctcattcatga 123  Q
    |||||||| | |||||| ||||  || |||||||||||||| | |||||| || |||||||| || |||||||| ||||| |||| ||| ||||||||||    
T  4712909 tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatga 4712810  T
Q  124 actcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgccaaatcctccaac 223  Q
    | || ||   ||||||| |||| ||  ||||  | ||||||||||||||||| |||  |||||| ||| ||||||||||||||||||| |||||||||||    
T  4712809 attcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaac 4712710  T
Q  224 accgatgatgaaaacatcatcgaagtt 250  Q
     |||||||| |||| ||| ||||||||    
T  4712709 cccgatgataaaaatatcttcgaagtt 4712683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 4863192 - 4863388
Alignment:
Q  54 ttgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaacttgatctcattcatgaactcgttggcaccttgttgagagccagatt 153  Q
    ||||||||||| | ||| || ||||||||||| || |||||||| |||||||| | |||||||||||||||||| ||   |||||||||||| || | ||    
T  4863192 ttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgagagagtaattcgatctcattcatgaactcatttataccttgttgagaacctggtt 4863291  T
Q  154 tgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    | || ||||||||||||||||| |||  |||||| ||  ||||||||||||||||||| || |||||||| || |||||||||| ||| || |||||    
T  4863292 taagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagtt 4863388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 4817118 - 4816881
Alignment:
Q  13 gttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaacttgat 112  Q
    |||||||||| |||||||| | |||||| |||    | |||||||||||||| |  || || ||||||||||| || |||||||| ||||| ||||  ||    
T  4817118 gttgcatgaagtcataaacgagaatcatctctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaat 4817019  T
Q  113 ctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgcca 212  Q
    |||||||| |||||||||  ||||||||||||| |||| ||| || |||||||||||||| ||  |   |||||| ||  ||||||||||||| |||||     
T  4817018 ctcattcaagaactcgttaacaccttgttgagaaccaggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccg 4816919  T
Q  213 aatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    || |||||||| |||||||| |||| ||| ||||||||    
T  4816918 aaccctccaaccccgatgataaaaatatcttcgaagtt 4816881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 4784689 - 4784452
Alignment:
Q  13 gttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaacttgat 112  Q
    |||||||||| |||||||| | |||||| |||    | |||||||||||||| |  || || ||||||||||| || |||||||| ||||| ||||  ||    
T  4784689 gttgcatgaagtcataaacgagaatcatctctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaat 4784590  T
Q  113 ctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgcca 212  Q
    |||||||| |||||||||  ||||||||||||| || | ||| || |||||||||||||| ||  |   |||||| ||  ||||||||||||| |||||     
T  4784589 ctcattcaagaactcgttcacaccttgttgagaacctggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccg 4784490  T
Q  213 aatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    || |||||||| |||||||| |||| ||| ||||||||    
T  4784489 aaccctccaaccccgatgataaaaatatcttcgaagtt 4784452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 4846875 - 4846638
Alignment:
Q  13 gttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaacttgat 112  Q
    |||||||||| |||||||| | |||||| ||||  || || ||||||||||| | |||||| ||||||||||| || |||||||| ||||| | || |||    
T  4846875 gttgcatgaagtcataaactagaatcatctctgcatcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgat 4846776  T
Q  113 ctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgcca 212  Q
     ||||||||||| || ||   ||||| | |||| || | |||  | |||||||||||||||||  ||  ||||| |||| |||||||||||||||||||     
T  4846775 ttcattcatgaattcatttagaccttatcgagaacccggtttacgacgttttatcgcaacaggtgtgagtccattgatgtaacctttgtacacgttgccg 4846676  T
Q  213 aatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    || |||||| | || ||||| |||| ||| ||||||||    
T  4846675 aaccctccagctccaatgataaaaatatcttcgaagtt 4846638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 4698003 - 4697807
Alignment:
Q  54 ttgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaacttgatctcattcatgaactcgttggcaccttgttgagagccagatt 153  Q
    ||||||||||| | ||| || |||||||||||||| ||||| || ||||| |||| ||| |||||||||||||||||  ||||||||||||| || | ||    
T  4698003 ttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccttgttgagaacccggtt 4697904  T
Q  154 tgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    | |  |||||||| || |||||  |   | |||||||| |||||||| ||||||| ||||| |||||||| || ||||| |||| ||| ||||||||    
T  4697903 tcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagtt 4697807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 18926593 - 18926356
Alignment:
Q  13 gttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaacttgat 112  Q
    |||||||||||||||||| || |||||| ||| |||   | ||||| || || |||||||||||||  |||||||||||||| || ||||| |||| |||    
T  18926593 gttgcatgaactcataaatcagaatcatctctttgttgccgttgcagtacccgacgagggataccagatgaatgtggcgaagttgagagagcaactcgat 18926494  T
Q  113 ctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgcca 212  Q
    ||||||||||||||||||||| |||||||||||||| | |||||| |||||||| ||||| ||  |||||  ||||||| ||||||| ||||||||||||    
T  18926493 ctcattcatgaactcgttggccccttgttgagagcctggtttgagacgttttattgcaacgggtgtggatttatcgatgaaacctttatacacgttgcca 18926394  T
Q  213 aatcctccaacaccgatgatgaaaacatcatcgaagtt 250  Q
    || |||||||| |||||||| ||| ||||||| |||||    
T  18926393 aaccctccaactccgatgattaaatcatcatcaaagtt 18926356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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