View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7798_low_3 (Length: 510)

Name: NF7798_low_3
Description: NF7798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7798_low_3
NF7798_low_3
[»] chr8 (3 HSPs)
chr8 (10-493)||(9831277-9831769)
chr8 (15-89)||(15907029-15907103)
chr8 (21-88)||(8862309-8862377)
[»] chr1 (5 HSPs)
chr1 (14-131)||(37200461-37200578)
chr1 (15-96)||(38544396-38544477)
chr1 (10-96)||(38546863-38546949)
chr1 (15-95)||(41126132-41126212)
chr1 (38-151)||(11439646-11439758)
[»] chr2 (7 HSPs)
chr2 (15-105)||(4472263-4472353)
chr2 (18-89)||(22884801-22884872)
chr2 (22-88)||(41113428-41113494)
chr2 (26-95)||(27740319-27740388)
chr2 (15-97)||(16952023-16952105)
chr2 (15-97)||(17022688-17022770)
chr2 (23-88)||(33788313-33788378)
[»] chr4 (3 HSPs)
chr4 (38-98)||(46487623-46487683)
chr4 (16-98)||(20632175-20632258)
chr4 (23-84)||(49747856-49747917)
[»] chr7 (4 HSPs)
chr7 (27-118)||(9427736-9427827)
chr7 (15-118)||(23983564-23983667)
chr7 (26-97)||(2331762-2331832)
chr7 (26-97)||(2339295-2339365)
[»] chr5 (5 HSPs)
chr5 (16-151)||(23426621-23426755)
chr5 (210-257)||(26398632-26398679)
chr5 (25-87)||(30097663-30097725)
chr5 (40-88)||(7682898-7682946)
chr5 (20-88)||(26405236-26405303)
[»] scaffold1613 (1 HSPs)
scaffold1613 (15-96)||(675-756)
[»] chr6 (1 HSPs)
chr6 (38-98)||(17278140-17278200)
[»] scaffold0050 (1 HSPs)
scaffold0050 (22-85)||(37034-37097)
[»] chr3 (2 HSPs)
chr3 (224-257)||(13420796-13420829)
chr3 (15-119)||(45354565-45354669)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 493
Target Start/End: Complemental strand, 9831769 - 9831277
Alignment:
Q  10 ggtgttgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctctt-----aatcaccgacctct 104  Q
    |||||||||||||||||||||||||||||||||||||||| || || | |||||||||| ||||||||||||||||||||      ||||||||||||||    
T  9831769 ggtgttgtgtaggggtgttttgtatggagtttattttcgggtggtcggcctatatacgacgtctttagtttgtattctctgctctgaatcaccgacctct 9831670  T
Q  105 gctccttttgagcacaaatctgattttctgaataaaatttgttgtttcnnnnnnnn-----tgtagtcgttggtcaatgatttagcaagtatactaaatg 199  Q
      || ||||||||| | |||||||||||| ||||||||||||| ||||             || |||| ||||||||||||||| |||||||||||||||    
T  9831669 attcgttttgagcaaagatctgattttctaaataaaatttgttatttcaaaaaaaaaaaaatgcagtcattggtcaatgatttaacaagtatactaaatg 9831570  T
Q  200 tgtggtcaactaataatattcataataagttcgtctctatatggattgtgaaatttcttacttacgatattgatatcgcgtttaattaattagaataaag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||      |||||||||||||||||||| |||    
T  9831569 tgtggtcaactaataatattcataataagttcgtctctatatggattgtgaaattcct-acttacgatat------cgcgtttaattaattagaatcaag 9831477  T
Q  300 taacat-gaagtatgcactatgcaatatggttaagttgacacaaataaagagagaagtgattgattagatcatgtttgattcccctctctctcaatgctc 398  Q
    || ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9831476 tatcattgaagtatgcactatgcaatatggttaagttgacacaaatgaagagagaagtgattgattagatcatgtttgattcccctctctctcaatgctc 9831377  T
Q  399 catagtaactaggtctatttcctacgatcctctaa-----tttgttttcaaggtatttaaacatagtagctagctttatagttggacattgccatcactt 493  Q
     ||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9831376 gatagtaactaggtctatttcctacgatcctctaatttgatttgttttcaaggtatttaaacatagtagctagctttatagttggacattgccatcactt 9831277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 15907029 - 15907103
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctct 89  Q
    |||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||    
T  15907029 tgtgtaggggtgttttgtttggagtttattgtcggatgctccgcctatatacgatgcctttagtttgtattctct 15907103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 8862377 - 8862309
Alignment:
Q  21 ggggtgttttgtatggagtttatttt-cggatgatccgtctatatacgatgtctttagtttgtattctc 88  Q
    |||||||||| ||||| ||||||||| |||||| ||||||||||||||  | |||| ||||||| ||||    
T  8862377 ggggtgttttttatggtgtttatttttcggatgttccgtctatatacggcgccttttgtttgtactctc 8862309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 37200461 - 37200578
Alignment:
Q  14 ttgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctcctttt 113  Q
    ||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||||   |||||||  ||||| || | ||    
T  37200461 ttgtgtaggggtgttttgtttgaagtttattttcggatgttccgcctatatacgatgtctttagtttgtattctcggtatcaccggtctctgttcgtctt 37200560  T
Q  114 gagcacaaatctgatttt 131  Q
    ||||| |||| |||||||    
T  37200561 gagcaaaaatttgatttt 37200578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 38544477 - 38544396
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcac 96  Q
    ||||||||| ||| || ||||| |||||||||||| || |||   ||||||||| |||||||||||||||||||| ||||||    
T  38544477 tgtgtagggatgtcttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcac 38544396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 38546949 - 38546863
Alignment:
Q  10 ggtgttgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcac 96  Q
    |||||||||||| | |||||| |||||  |||||||||||||| |||| ||||||||||    ||||||||||| ||||| ||||||    
T  38546949 ggtgttgtgtagcgatgttttttatggtttttattttcggatgttccgcctatatacgacacatttagtttgtactctctgaatcac 38546863  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 41126212 - 41126132
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatca 95  Q
    ||||||||||||| || |||   |||||||||||| || ||   |||||||||||| |||||||||||||||||| |||||    
T  41126212 tgtgtaggggtgtcttttataatgtttattttcgggtgttctacctatatacgatgcctttagtttgtattctctgaatca 41126132  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 11439758 - 11439646
Alignment:
Q  38 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttgagcacaaatctgattttctgaat 137  Q
    ||||||||||||||| |||||||||||| |  | |||| |||||||||||| |  ||||||| || || || | ||||||| | ||||| || | | |||    
T  11439758 gtttattttcggatgttccgtctatatatgtcgccttttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggttgt-ttaat 11439660  T
Q  138 aaaatttgttgttt 151  Q
    ||||||||||||||    
T  11439659 aaaatttgttgttt 11439646  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 4472263 - 4472353
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctg 105  Q
    |||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||| | ||||||| |||||    
T  4472263 tgtgtaggggtgatttttatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattcaccgaactctg 4472353  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 22884872 - 22884801
Alignment:
Q  18 gtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctct 89  Q
    |||||||||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||||||||||    
T  22884872 gtaggggtgttttgtatggagtttattttcgggtgttccgcctatatacgacgcctttagtttgtattctct 22884801  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 41113494 - 41113428
Alignment:
Q  22 gggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctc 88  Q
    ||||||||| || ||  |||||||||||||| |||| |||||||| |||||||||||||||||||||    
T  41113494 gggtgttttttagggtatttattttcggatgttccgcctatatacaatgtctttagtttgtattctc 41113428  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 27740319 - 27740388
Alignment:
Q  26 gttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatca 95  Q
    |||||||||||||||||||||||| || |||  |||||||||| | |||||||||||||| ||| |||||    
T  27740319 gttttgtatggagtttattttcgggtgttccacctatatacgacgcctttagtttgtattatctgaatca 27740388  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 16952105 - 16952023
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcacc 97  Q
    |||||||| |||| || ||||  ||||||||| ||||| || | |||||||||| |||| ||||||||||||||| |||||||    
T  16952105 tgtgtaggagtgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacc 16952023  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 17022770 - 17022688
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcacc 97  Q
    |||||||| |||| || ||||  ||||||||| ||||| || | |||||||||| |||| ||||||||||||||| |||||||    
T  17022770 tgtgtaggagtgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacc 17022688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 33788378 - 33788313
Alignment:
Q  23 ggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctc 88  Q
    ||||||||||||||| ||||||||||| || ||||  ||||||||  | |||||||||||||||||    
T  33788378 ggtgttttgtatggattttattttcgggtgttccgcatatatacggcgcctttagtttgtattctc 33788313  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 46487623 - 46487683
Alignment:
Q  38 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccg 98  Q
    ||||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||||    
T  46487623 gtttattttcggatgttccgcctatatacgatgcctttagtttgtattctctaaatcaccg 46487683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 20632258 - 20632175
Alignment:
Q  16 gtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtc-tttagtttgtattctcttaatcaccg 98  Q
    ||||||||||||||||| |||||| ||||||||| |  |||| |||||||| | | | ||||||||||||||||| ||||||||    
T  20632258 gtgtaggggtgttttgtttggagtgtattttcgggtattccgcctatatacaacgccttttagtttgtattctctgaatcaccg 20632175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 49747856 - 49747917
Alignment:
Q  23 ggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtat 84  Q
    |||||||| ||||| ||||||||| ||||| ||||  |||||||||||||||| ||||||||    
T  49747856 ggtgttttttatggtgtttatttttggatgttccgcatatatacgatgtcttttgtttgtat 49747917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 9427827 - 9427736
Alignment:
Q  27 ttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttgagca 118  Q
    |||||||||||||||||||| ||||  |||| ||||||||| ||  ||||||||||||||||| ||||||||| ||||| || | |||||||    
T  9427827 ttttgtatggagtttatttttggatattccgcctatatacgttgcatttagtttgtattctctaaatcaccgatctctgttcgtcttgagca 9427736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 23983564 - 23983667
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttg 114  Q
    ||||||||| ||| || ||||  ||||||||| ||||| |||| |||||||||||| ||||| |||||||||||| ||||||||| || || || |||||    
T  23983564 tgtgtagggatgtcttttatgatgtttatttttggatgctccgcctatatacgatgcctttaatttgtattctctgaatcaccgatctttgttcgttttg 23983663  T
Q  115 agca 118  Q
    ||||    
T  23983664 agca 23983667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 2331832 - 2331762
Alignment:
Q  26 gttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcacc 97  Q
    ||||| ||||| ||||||||| ||||| |||||||||||||| | |||| ||||||||  ||||||||||||    
T  2331832 gttttttatggtgtttatttt-ggatgttccgtctatatacggtatcttgagtttgtagcctcttaatcacc 2331762  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 2339365 - 2339295
Alignment:
Q  26 gttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcacc 97  Q
    ||||| ||||| ||||||||| ||||| ||||||||||||||  ||||| ||||||||  ||||||||||||    
T  2339365 gttttttatggtgtttatttt-ggatgttccgtctatatacggcgtcttgagtttgtagcctcttaatcacc 2339295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 23426621 - 23426755
Alignment:
Q  16 gtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttga 115  Q
    ||||||| ||||||||| |||||| ||||||||| || |||| |||||||||    ||||   ||||||||||| ||||||||  ||||| |||| ||||    
T  23426621 gtgtaggagtgttttgtttggagtgtattttcgggtgttccgcctatatacggcaccttttagttgtattctctgaatcaccggtctctgttcctcttga 23426720  T
Q  116 gcacaaatctgattttctgaataaaatttgttgttt 151  Q
    |||  ||||||||||| | ||||||||||| |||||    
T  23426721 gcagcaatctgatttt-taaataaaatttgctgttt 23426755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 26398679 - 26398632
Alignment:
Q  210 taataatattcataataagttcgtctctatatggattgtgaaatttct 257  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||    
T  26398679 taataatatttataataagtttgtctttatatggattgtgaaatttct 26398632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 30097663 - 30097725
Alignment:
Q  25 tgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattct 87  Q
    |||||| || || |||||||||||| || |||| |||||||||  ||||||||||||||||||    
T  30097663 tgttttttagggtgtttattttcgggtgttccgcctatatacggcgtctttagtttgtattct 30097725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 7682898 - 7682946
Alignment:
Q  40 ttattttcggatgatccgtctatatacgatgtctttagtttgtattctc 88  Q
    ||||||||||||| |||| |||||||||| | ||||| |||||||||||    
T  7682898 ttattttcggatgttccgcctatatacgacgcctttaatttgtattctc 7682946  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 26405303 - 26405236
Alignment:
Q  20 aggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctc 88  Q
    ||||||||||| || || |||||||||||| || |||| |||||||||| | |||| ||||||||||||    
T  26405303 aggggtgtttt-taaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtattctc 26405236  T

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Target: scaffold1613 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 756 - 675
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcac 96  Q
    ||||||||| ||| || ||||| |||||||||||| || |||   ||||||||| |||||||||||||||||||| ||||||    
T  756 tgtgtagggatgtcttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcac 675  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 17278200 - 17278140
Alignment:
Q  38 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccg 98  Q
    |||||||||||| || |||| |||||||||| | |||||| ||||||||||| ||||||||    
T  17278200 gtttattttcgggtgttccgcctatatacgacgcctttagattgtattctctgaatcaccg 17278140  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 37034 - 37097
Alignment:
Q  22 gggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtatt 85  Q
    ||||||||| ||||| ||||||||||||||| |||| ||||||||   |||||| |||||||||    
T  37034 gggtgttttttatggtgtttattttcggatgttccgcctatatacagcgtcttttgtttgtatt 37097  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 13420829 - 13420796
Alignment:
Q  224 ataagttcgtctctatatggattgtgaaatttct 257  Q
    |||||||| |||||||||||||||||||||||||    
T  13420829 ataagttcttctctatatggattgtgaaatttct 13420796  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 45354669 - 45354565
Alignment:
Q  15 tgtgtaggggtgttttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttg 114  Q
    ||||||||||||| || ||||  ||||||||||||||  |||| || ||||| |   ||||| |||||||||||| ||||| ||  |||||||| | |||    
T  45354669 tgtgtaggggtgtcttttatgatgtttattttcggatattccgcctctatacaacacctttaatttgtattctctaaatcatcggtctctgctcgtcttg 45354570  T
Q  115 agcac 119  Q
    |||||    
T  45354569 agcac 45354565  T

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