View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_high_12 (Length: 349)
Name: NF7799_high_12
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 27783967 - 27783637
Alignment:
| Q |
1 |
ataagtgaacgaattcatcagtcttcttcatccaaaactgataacataatcttcaagttgattatgatattaaatttaccttttttattgacctgtcaga |
100 |
Q |
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| T |
27783967 |
ataagcgaaccaattcatcagtcttcttcatccaaaactgataacataatcttcaagttgattatgatattaaatttaccttttttattgacctgtcaga |
27783868 |
T |
|
| Q |
101 |
ttctgaaatggctgcaacttcagtatctggcttgttcttcctgtcaaatagattcccatgtgtaaaatataaaatttatcatctatacacaatattttaa |
200 |
Q |
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| T |
27783867 |
ttctgaaatggctgcaacttcagtatctggcttgttcttcctgtcaaatagattcccatgtgtaaaatataaaatttatcatctatacacaatattttaa |
27783768 |
T |
|
| Q |
201 |
gtgccaaaatacctcaa-nnnnnnnnngcatacaaaagtgatcgagtctaatattgtaaaagcgatctcttgtagaaaactaaagcgtttgagtttaata |
299 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27783767 |
gtgccaaaatacctcaatattttttttacatacaaaagcgatcgagtctaatattgtaaaagcgatctcttgtagaaaactaaagcgtttgagtctaata |
27783668 |
T |
|
| Q |
300 |
ttgtaaaattaggaactaagaaagtgatgct |
330 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27783667 |
ttgtaaaattaggaactaagaaagtgatgct |
27783637 |
T |
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