View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_high_19 (Length: 277)
Name: NF7799_high_19
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_high_19 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 6810552 - 6810828
Alignment:
| Q |
1 |
atctaagagtgtggaatgcacaacgtactgcagccaatgaatatgacattcctaataatgctctgctttgtggcaaagcattgggacatcatccttagag |
100 |
Q |
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| T |
6810552 |
atctaagagtgtggaatgcacaacgtactgcagccaatgaatatgacattcctaataatgctctgctttgtggcaaagcattgggacatcatccttagag |
6810651 |
T |
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| Q |
101 |
tatacgttttcaaccatttatttattggtgttttattctagtcatgagagcttgactacagctagattttttattccttaagaagatgatatagtacact |
200 |
Q |
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| T |
6810652 |
tatacgttttcaaccatttatttattggtgttttattctagtcatgagagcttgactacagctagattttttattccttaagaagatgatataggacact |
6810751 |
T |
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| Q |
201 |
agaggaagaagttattttctcaaatttgtgacagtctggacttatattgagagaaatcatgtactgaaatttcttcg |
277 |
Q |
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| T |
6810752 |
agagggagaagttattttctcaaatttgtgacagtctggacttatattgagagaaatcatgtactgaaatttcttcg |
6810828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6799494 - 6799757
Alignment:
| Q |
1 |
atctaagagtgtggaatgcacaacgtactgcagccaatgaatatgacattcctaataatgctctgctttgtggcaaagcattgggacatcatccttagag |
100 |
Q |
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| T |
6799494 |
atctaagagtgtggaatgcacaacgtactgcagccaatgaatatgacattcctaataatgctctgctttgtggcaaagcattgggacatcatccttagag |
6799593 |
T |
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| Q |
101 |
tatacgttttcaaccatttatttattggtgttttattctagtcatgagagcttgactacagctagattttttattccttaagaagatgatatagtacact |
200 |
Q |
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| T |
6799594 |
tatacgttttcaaccattcatt------ggtttcattctagtcatgagagcttgactacaactaga-tttttat---ttattaagatgatatag--gatt |
6799681 |
T |
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| Q |
201 |
agaggaagaagttattttctcaaatttgtgacagtctggacttat-attgagagaaatcatgtactgaaatttctt |
275 |
Q |
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| T |
6799682 |
agagggagaagctattttatcaaatttgtgacagtctcaacatatgcttgagagaaatcatgtactgaaatttctt |
6799757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 6819020 - 6819111
Alignment:
| Q |
79 |
cattgggacatcatccttagagtata--cgttttcaaccatttatttattggtgttttattctagtcatgagagcttgactacagctagatttttt |
172 |
Q |
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| T |
6819020 |
cattgcgacatcatctttagagtatatacattttcaaccatttattgttag---ttttattctagtcatga-agcttgactacaactagacttttt |
6819111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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