View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7799_high_2 (Length: 693)

Name: NF7799_high_2
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7799_high_2
NF7799_high_2
[»] chr7 (5 HSPs)
chr7 (17-685)||(46936777-46937439)
chr7 (200-303)||(36853049-36853151)
chr7 (224-302)||(24547692-24547770)
chr7 (248-302)||(46766091-46766145)
chr7 (242-302)||(35169991-35170049)
[»] chr1 (9 HSPs)
chr1 (443-622)||(36639417-36639596)
chr1 (438-660)||(36634611-36634833)
chr1 (17-142)||(36634994-36635122)
chr1 (74-132)||(36639699-36639757)
chr1 (198-282)||(16979579-16979663)
chr1 (246-305)||(420501-420560)
chr1 (224-305)||(974465-974546)
chr1 (242-296)||(15954009-15954063)
chr1 (250-302)||(14303963-14304015)
[»] chr5 (6 HSPs)
chr5 (194-303)||(35035586-35035695)
chr5 (244-302)||(16230755-16230813)
chr5 (242-291)||(16252635-16252684)
chr5 (243-302)||(8012027-8012086)
chr5 (250-296)||(36639753-36639799)
chr5 (201-237)||(43207914-43207950)
[»] chr8 (4 HSPs)
chr8 (244-302)||(26762885-26762943)
chr8 (242-302)||(30011734-30011794)
chr8 (243-302)||(26815559-26815620)
chr8 (242-278)||(40694463-40694499)
[»] chr3 (6 HSPs)
chr3 (243-293)||(43244854-43244904)
chr3 (251-295)||(42336425-42336469)
chr3 (244-305)||(48553065-48553124)
chr3 (200-239)||(45161775-45161814)
chr3 (242-292)||(7928767-7928817)
chr3 (242-280)||(33262587-33262624)
[»] chr4 (3 HSPs)
chr4 (225-302)||(6468691-6468768)
chr4 (244-282)||(6959316-6959354)
chr4 (247-279)||(41251669-41251701)
[»] scaffold0312 (1 HSPs)
scaffold0312 (246-305)||(10011-10070)
[»] chr2 (4 HSPs)
chr2 (199-304)||(10231798-10231903)
chr2 (244-294)||(26804046-26804096)
chr2 (201-302)||(5262383-5262484)
chr2 (248-289)||(9529531-9529572)
[»] chr6 (5 HSPs)
chr6 (224-296)||(4593883-4593955)
chr6 (243-303)||(8782990-8783050)
chr6 (242-281)||(6893758-6893797)
chr6 (226-278)||(29872548-29872599)
chr6 (202-270)||(33786196-33786264)


Alignment Details
Target: chr7 (Bit Score: 613; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 17 - 685
Target Start/End: Original strand, 46936777 - 46937439
Alignment:
Q  17 accttttgctgtaattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctccatatccacaacatgcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46936777 accttttgctgtaattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctccatatccacaacatgcc 46936876  T
Q  117 ataataggttgttcaaaccctgcaaatatataataatattacaaatttaacaactcttggaaaagttatttatactatactaagagtttaattttgatgc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||    
T  46936877 ataataggttgttcaaaccctgcaaatatataataatattacaaatttaacaactcttggaaaagttatttatacta-----agagtttaattttgatgc 46936971  T
Q  217 actcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgtgatgattataa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46936972 actcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgtgatgattataa 46937071  T
Q  317 tttattcacagcataaaaagctttacaccaacgatgtattatatataaaatcatattacaaactctaaaggaaaaatcaatgaaatagataaatgtaata 416  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  46937072 tttattgacagcataaaaagctttacaccaacgatgtat-atatataaaatcataatacaaactctaaaggaaaaatcaatgaaatagataaatgcaata 46937170  T
Q  417 agccaagttactaaccgtatcttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46937171 agccaagttactaaccgtatcttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctg 46937270  T
Q  517 caatttactacacagagcatgaagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagtt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46937271 caatttactacacagagcatgaagttgtaggttaaaggttttaacagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagtt 46937370  T
Q  617 ccaaatttggctacattctgagctaagcatccaagaggacctgtattgtgtatccagaataatctagcc 685  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  46937371 ccaaatttggcaacattctgagctaagcatccaagaggacctgtattgtgtatccagaaatatctagcc 46937439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 36853049 - 36853151
Alignment:
Q  200 gagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatc 299  Q
    ||||||||||||||| |||| | ||| |||||||||| |   |||||  ||||||||| |||||||||||||||||||||||| | ||||||||| ||||    
T  36853049 gagtttaattttgatacactgtcggtataaaaagttt-acattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagttatgattataatc 36853147  T
Q  300 aaat 303  Q
    ||||    
T  36853148 aaat 36853151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 24547692 - 24547770
Alignment:
Q  224 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    |||||||||||||||   |||||| ||||||||| ||||||||| ||||| |||||||| | |||||||| || |||||    
T  24547692 gtgtaaaaagttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaa 24547770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 46766145 - 46766091
Alignment:
Q  248 caaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    ||||||| || ||||||||||||||||||||||||||  |||||||||| |||||    
T  46766145 caaatcataaccaatcatatgtgtgactttagaagcaggtatgattaaagtcaaa 46766091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 35170049 - 35169991
Alignment:
Q  242 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    ||||||||||||| || |||||||  ||||||||||||||| | ||||||||||| |||||    
T  35170049 tgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaa 35169991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 443 - 622
Target Start/End: Complemental strand, 36639596 - 36639417
Alignment:
Q  443 tagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatgaagtt 542  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||| ||||||  ||||||||| || |||||||||||||| || | | | ||||| |    
T  36639596 tagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggccctgcaatttactgcagaaatcttgaagat 36639497  T
Q  543 gtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaat 622  Q
     | | ||||| | ||||||||||  ||||||   || || |||||||||||||||||| || ||||||||||| ||||||    
T  36639496 attgattaaaagctttagcagctaagttatgttaacgaagacatcctagttcatcaagtttcgatggatcagtgccaaat 36639417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 438 - 660
Target Start/End: Complemental strand, 36634833 - 36634611
Alignment:
Q  438 ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg 537  Q
    |||| ||||||||||||||||   |||||||||| ||||||||||||||||| ||||||  |||| |||| || |||||||||||    |||| ||| ||    
T  36634833 ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttg 36634734  T
Q  538 aagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggctacattctga 637  Q
     |  ||||| |||||||  |||||||||||||| ||  ||| || ||||||||||||||||| |||||||  ||||   |||||| |||| ||||| |||    
T  36634733 caactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttga 36634634  T
Q  638 gctaagcatccaagaggacctgt 660  Q
     | ||||||||||| ||||||||    
T  36634633 cccaagcatccaagtggacctgt 36634611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 36635122 - 36634994
Alignment:
Q  17 accttttgctgtaattgtggttccattgaaggtctttgt-gttc--ccacaagtgactctactgtcatagttcaatggtggacctccatatccacaacat 113  Q
    ||||||||||||||||||||| ||||| ||| || |||| |||   |||||||  || | |||||||||||| ||||| ||||||||||||||||| ||     
T  36635122 accttttgctgtaattgtggtcccattcaagatcgttgttgttagtccacaagaaacgcgactgtcatagttaaatggcggacctccatatccacagcaa 36635023  T
Q  114 gccataataggttgttcaaaccctgcaaa 142  Q
    ||||||| |||||||||||||||||||||    
T  36635022 gccataaaaggttgttcaaaccctgcaaa 36634994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 36639757 - 36639699
Alignment:
Q  74 actgtcatagttcaatggtggacctccatatccacaacatgccataataggttgttcaa 132  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||    
T  36639757 actgtcatagttcaatggcgggcctccatatccacaacaagccataatcggctgttcaa 36639699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 16979579 - 16979663
Alignment:
Q  198 aagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaag 282  Q
    ||||||||||||||||| |||| |  |||||||||| ||||   |||||||||||||||| |||  |||| ||||||||||||||    
T  16979579 aagagtttaattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaag 16979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 420501 - 420560
Alignment:
Q  246 aacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 305  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||    
T  420501 aacaaagcacaatcaatcatatgtgtgatttttgaagtaattatggttaaagtcaaatgt 420560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 974546 - 974465
Alignment:
Q  224 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 305  Q
    |||||||||||||||   | | ||||||  |||||||||||||||||||| ||| |||| | ||||| ||||||||||||||    
T  974546 gtgtaaaaagttttacactctgaacaaagtacaatcaatcatatgtgtgatttttgaagtagttatggttaaaatcaaatgt 974465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 15954009 - 15954063
Alignment:
Q  242 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 296  Q
    |||||| |||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  15954009 tgtcaataaatcagaatcaatcgtatttgtgactttagaagtagttatgattaaa 15954063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 14304015 - 14303963
Alignment:
Q  250 aatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    |||||||| |||||||||| ||||||||| ||| | ||||||||||| |||||    
T  14304015 aatcacaaccaatcatatgagtgactttaaaagtagttatgattaaagtcaaa 14303963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 35035695 - 35035586
Alignment:
Q  194 tactaagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatt 293  Q
    ||||| ||||||||||||||| |||| | ||| |||||| |||||   |||||  ||||||||| ||||||||||||||| |||||||| | ||||||||    
T  35035695 tactatgagtttaattttgatacactgtcggtataaaaaattttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgatt 35035596  T
Q  294 aaaatcaaat 303  Q
    ||||||||||    
T  35035595 aaaatcaaat 35035586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 16230755 - 16230813
Alignment:
Q  244 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    |||||||||||||| ||||||||||| ||| |||||||| | ||||||||||| |||||    
T  16230755 tcaacaaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaa 16230813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 16252684 - 16252635
Alignment:
Q  242 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatga 291  Q
    |||||||| ||||||||||||||| ||||||||||||||||  |||||||    
T  16252684 tgtcaacacatcacaatcaatcatgtgtgtgactttagaagtgattatga 16252635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 8012086 - 8012027
Alignment:
Q  243 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    |||||||||||||||||||||||||  ||||||||| ||  | ||||||| |||||||||    
T  8012086 gtcaacaaatcacaatcaatcatatacgtgactttaaaaatagttatgataaaaatcaaa 8012027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 36639753 - 36639799
Alignment:
Q  250 aatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 296  Q
    |||||||  |||||||||||||||||||||||| | |||||||||||    
T  36639753 aatcacatgcaatcatatgtgtgactttagaagtagttatgattaaa 36639799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 43207950 - 43207914
Alignment:
Q  201 agtttaattttgatgcactcttggtgtaaaaagtttt 237  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  43207950 agtttaattttcatgcacttttggtgtaaaaagtttt 43207914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 26762943 - 26762885
Alignment:
Q  244 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    |||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||    
T  26762943 tcaaaaaatcacaatcaatcatttgtatgactttagaagtaattatgattaaagtcaaa 26762885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 30011734 - 30011794
Alignment:
Q  242 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    ||||||||||||| |||||||||||||||||| |||||||| | |||||||| || |||||    
T  30011734 tgtcaacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagtcaaa 30011794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 26815620 - 26815559
Alignment:
Q  243 gtcaacaaatcacaatcaatcatatgtgt--gactttagaagcaattatgattaaaatcaaa 302  Q
    |||||||||||||||||||||||||||||  ||||||||||  | ||||||| |||||||||    
T  26815620 gtcaacaaatcacaatcaatcatatgtgtgcgactttagaaatagttatgataaaaatcaaa 26815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 40694463 - 40694499
Alignment:
Q  242 tgtcaacaaatcacaatcaatcatatgtgtgacttta 278  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  40694463 tgtcaacaaaacacaatcaatcatgtgtgtgacttta 40694499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 43244904 - 43244854
Alignment:
Q  243 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatt 293  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  43244904 gtcaacaaatcacaatcaataatatgtgtgactttagaagtgattatgatt 43244854  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 42336469 - 42336425
Alignment:
Q  251 atcacaatcaatcatatgtgtgactttagaagcaattatgattaa 295  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  42336469 atcacaatcaatcatatgtgtgactttagaattaattatgattaa 42336425  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 48553065 - 48553124
Alignment:
Q  244 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 305  Q
    |||||||||||||||||||||||  ||||||||||||||   ||||||||||| ||||||||    
T  48553065 tcaacaaatcacaatcaatcata--tgtgactttagaagtttttatgattaaattcaaatgt 48553124  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 45161814 - 45161775
Alignment:
Q  200 gagtttaattttgatgcactcttggtgtaaaaagttttat 239  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  45161814 gagtttaattttaatgaactcttggtgtaaaaagttttat 45161775  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 7928817 - 7928767
Alignment:
Q  242 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgat 292  Q
    |||||||| ||| || ||||||||||||||||||||||||| | |||||||    
T  7928817 tgtcaacagatcccactcaatcatatgtgtgactttagaagtagttatgat 7928767  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 33262587 - 33262624
Alignment:
Q  242 tgtcaacaaatcacaatcaatcatatgtgtgactttaga 280  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33262587 tgtcaacaaa-cacaatcaatcatatgtgtgactttaga 33262624  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 6468768 - 6468691
Alignment:
Q  225 tgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 302  Q
    ||||||||||||||   |||||||||||||||| ||  ||||||| |||||||||||| ||||| ||||||| |||||    
T  6468768 tgtaaaaagttttacactgtcaacaaatcacaaccacgcatatgtatgactttagaagtaattaagattaaagtcaaa 6468691  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 6959354 - 6959316
Alignment:
Q  244 tcaacaaatcacaatcaatcatatgtgtgactttagaag 282  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  6959354 tcaacaaatcacaaccaatcatatgtgtgacttaagaag 6959316  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 41251669 - 41251701
Alignment:
Q  247 acaaatcacaatcaatcatatgtgtgactttag 279  Q
    ||||||||||||||||||||||||| |||||||    
T  41251669 acaaatcacaatcaatcatatgtgtaactttag 41251701  T

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Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 10070 - 10011
Alignment:
Q  246 aacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 305  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||    
T  10070 aacaaagcacaatcaatcatatgtgtgatttttgaagtaattatggttaaagtcaaatgt 10011  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 10231798 - 10231903
Alignment:
Q  199 agagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaat 298  Q
    ||||||||||||||||  | | |  |||||||||||||||   |||| ||| || |||||||||||||||||||| |||||||  | ||||||| ||| |    
T  10231798 agagtttaattttgatatattgtcagtgtaaaaagttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagt 10231897  T
Q  299 caaatg 304  Q
    ||||||    
T  10231898 caaatg 10231903  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 26804046 - 26804096
Alignment:
Q  244 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatta 294  Q
    |||||||||||||||||||| ||| | |||||||||||| |||||| ||||    
T  26804046 tcaacaaatcacaatcaatcttatctctgactttagaagtaattataatta 26804096  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 5262383 - 5262484
Alignment:
Q  201 agtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatca 300  Q
    |||||||||||||| |||| || ||||||||||||||    ||| || || |||||| || |||||||||||| ||| |||| | ||||||| ||| |||    
T  5262383 agtttaattttgatacactgttagtgtaaaaagtttttcactgttaataagtcacaaacattcatatgtgtgagtttcgaagtagttatgatcaaagtca 5262482  T
Q  301 aa 302  Q
    ||    
T  5262483 aa 5262484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 9529531 - 9529572
Alignment:
Q  248 caaatcacaatcaatcatatgtgtgactttagaagcaattat 289  Q
    |||||||||| |||||||||||||||||||| ||| ||||||    
T  9529531 caaatcacaaccaatcatatgtgtgactttaaaagtaattat 9529572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 4593955 - 4593883
Alignment:
Q  224 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 296  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||  | |||||||||| | ||| |||||||    
T  4593955 gtgtaaaaagttttacggtgtcagcaaatcacaaccaatcatatgatttactttagaagtagttaagattaaa 4593883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 8783050 - 8782990
Alignment:
Q  243 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaat 303  Q
    ||||||||||||||| ||||||||| | ||||||| |||| | ||||||||||| ||||||    
T  8783050 gtcaacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaaat 8782990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 6893758 - 6893797
Alignment:
Q  242 tgtcaacaaatcacaatcaatcatatgtgtgactttagaa 281  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  6893758 tgtcaacaaattacagtcaatcatatgtgtgactttagaa 6893797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 29872599 - 29872548
Alignment:
Q  226 gtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgacttta 278  Q
    |||||||||||||   |||||| ||||||||| ||||||||||||||||||||    
T  29872599 gtaaaaagttttacactgtcaa-aaatcacaaccaatcatatgtgtgacttta 29872548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 33786264 - 33786196
Alignment:
Q  202 gtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtg 270  Q
    |||||||||||||  ||  | ||| |||||||||||||  | ||||||||||||||||||| |||||||    
T  33786264 gtttaattttgataaaccgtcggtataaaaagttttatactatcaacaaatcacaatcaattatatgtg 33786196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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