View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_high_21 (Length: 217)
Name: NF7799_high_21
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_high_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 4775732 - 4775609
Alignment:
| Q |
5 |
atattgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaa-------atgtcccaacaagtcatcagctagccgatctactgac |
97 |
Q |
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| T |
4775732 |
atattgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaac |
4775633 |
T |
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| Q |
98 |
aaagctgttatcctcggtgcggca |
121 |
Q |
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| T |
4775632 |
aaagccgttatcctcggtacggca |
4775609 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 4775571 - 4775480
Alignment:
| Q |
123 |
acctccatcttgagggggcgtgtaggagtattaacttaattagctttgaccaaatcaaataatgatggctgtaataatatcagtaaatggaaatc |
217 |
Q |
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| T |
4775571 |
acctccttcttgagggggcgtgtaggagtattaactta---agcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatc |
4775480 |
T |
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Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 448677 - 448603
Alignment:
| Q |
143 |
tgtaggagtattaacttaattagctttgaccaaatcaaataatgatggctgtaataatatcagtaaatggaaatc |
217 |
Q |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatc |
448603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 43061091 - 43060973
Alignment:
| Q |
7 |
attgccatagattatcattttgttcgcgatctcgttgccgc---caagaagcttcaa-------atgtcccaacaagtcatcagctagccgatctactga |
96 |
Q |
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| T |
43061091 |
attgccatagattatcattttgtttgcgatctcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctca |
43060992 |
T |
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| Q |
97 |
caaagctgttatcctcggt |
115 |
Q |
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| T |
43060991 |
caaagccgttatcctcggt |
43060973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 43060929 - 43060838
Alignment:
| Q |
123 |
acctccatcttgagggggcgtgtaggagtattaacttaattagctttgaccaaatcaaataatgatggctgtaataatatcagtaaatggaaatc |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||||| |||| |||||| ||||||||||||||||||| |
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| T |
43060929 |
acctccatcttgagcgggcgtgtaggagtattaactta---agcatttaccaaatcaaataacaatggttgtaatgatatcagtaaatggaaatc |
43060838 |
T |
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