View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_high_22 (Length: 205)
Name: NF7799_high_22
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 4356189 - 4356003
Alignment:
| Q |
1 |
cctatttcctctaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagagatctccatttgtaactgtaa |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4356189 |
cctatttcctcgaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagatatctccatttgtaactgtaa |
4356090 |
T |
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| Q |
101 |
acccggtaacttgaggatttttctcttgtaatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataat |
187 |
Q |
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| T |
4356089 |
acccggtaacttgaggatttttctcttgtaatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataat |
4356003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 4674723 - 4674909
Alignment:
| Q |
1 |
cctatttcctctaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagagatctccatttgtaactgtaa |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4674723 |
cctatttcctcgaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagatatctccatttgtaactgtaa |
4674822 |
T |
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| Q |
101 |
acccggtaacttgaggatttttctcttgtaatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataat |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4674823 |
acccggtaacttgaggatttttctcttgtaatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataat |
4674909 |
T |
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