View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7799_high_3 (Length: 665)
Name: NF7799_high_3
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_high_3 |
 | |
|
| [»] scaffold0330 (1 HSPs) |
| | |
|
| [»] scaffold0240 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Original strand, 14196405 - 14196979
Alignment:
| Q |
18 |
attctgaagtgcaaaaattgtgcaggtgaaacattatgaagttttagaaatgcagaaagtattggagcaaaaagttctttttactacaatagttagaagc |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
14196405 |
attctgaagtgcgaaaattgtgcaggtgaaacattctgaagttttagaaatgcagaaaggattggaacaaaaagttctatttactacaataattagaagc |
14196504 |
T |
|
| Q |
118 |
aagagatgctgattcaaattcattgtcagaagcacaagtagattctggagaatcaagctagtagcagtattcagcaaggcttgagaagaaaagggattat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14196505 |
aagagatgctgattcaaattcattgtcagatgcacaagtagattctggagaatcaagctagtagcagtatgcagcaaggcttgagaagaaaagggattat |
14196604 |
T |
|
| Q |
218 |
caagccccatgattttagttttgttccaatttaagatgtttgtagaatttgaatcaagggggtgtgttgaagtataattcatattttaatgttagttagt |
317 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14196605 |
caagccccgtgattttagttttgttccaatttaagatgtttgtagaatctgaattaagggggtgtgttgaagtataattcatattctaatgttagttagt |
14196704 |
T |
|
| Q |
318 |
agaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagttcgttagaggcttgtagtgcaagttactcaacttag |
417 |
Q |
| |
|
| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
14196705 |
ataggataaatccaactatgtttgttggttagttggttagtaagtaactaactagttagttagtttgttagaggcttgtagtgcaagttattcaacttat |
14196804 |
T |
|
| Q |
418 |
cctataagtacttagctttgtattcagttga-tatagattgtatttgtatagcagacatctcatatctttcatattcaataatagaagagttttatcatt |
516 |
Q |
| |
|
||||||||||| | ||||||||| || || || ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14196805 |
cctataagtac--atgtttgtattctgtagattacaga------ttgtatagctcacatctcatatctctcatattcaataatagaagagttttatcatt |
14196896 |
T |
|
| Q |
517 |
cctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatgttctatcaa |
599 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
14196897 |
tctttgtagtttcctctttaagtgtgagtgtgtagagatcattctaatttttctctcaattatgtatgtgcatgttctatcaa |
14196979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 598
Target Start/End: Original strand, 43040918 - 43041481
Alignment:
| Q |
18 |
attctgaagtgcaaaaattgtgcaggtgaaacattatgaagttttagaaatgcagaaagtattggagcaaaaagttctttttactacaatagttagaagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
43040918 |
attctgaagtgcaaaaattgtgcaggtgaaacattctgaagttttagaaatgcagaaaggattggagcagaaagttcagttttctacaatagttagaagc |
43041017 |
T |
|
| Q |
118 |
aagagatgctgattcaaattcattgtcagaagcacaagtagattctggagaatcaagctagtagcagtattca-------gcaaggcttgagaagaaaag |
210 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||||| || |||||| ||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
43041018 |
aagagatgctgattcacaatcattatcagaagcacaagtagattatgaagaatctagctagtagcagtatgaatgatgtagcaaggcttaagaagaaaa- |
43041116 |
T |
|
| Q |
211 |
ggattatcaagccccatgattttagttttgttccaatttaagatgtttgtagaatttgaatcaagggggtgtgttgaagtataattcatattttaatgtt |
310 |
Q |
| |
|
|||| | |||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43041117 |
---------agcctcgtgattttagttt-gttccaatttaagatgttagtagaatctgaattaagggggtgtgttgaagtataattcatattctaatgtt |
43041206 |
T |
|
| Q |
311 |
agttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagttcgttagaggcttgtagtgcaagttactc |
410 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
43041207 |
agttagttatggatagatccaactatgcttgttggttagttag--------taactaactagttagttagtttgttagtggcttgtagtgcaagttactc |
43041298 |
T |
|
| Q |
411 |
aacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcatatctttcatattcaataatagaagagttt |
509 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43041299 |
aacttagcctataagtacttagcttttgtattcagttgatataga------ttgtatagcacacatctcatatctctcatattcaataatagaagagttt |
43041392 |
T |
|
| Q |
510 |
tatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatgttctatca |
598 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
43041393 |
tatcattcttttgtagtttcctctataagtgtgagtgtgtagagatcattctaatatttctctcaattatgtatgtgcatgttctatca |
43041481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 353 - 598
Target Start/End: Original strand, 43039349 - 43039589
Alignment:
| Q |
353 |
gttagtaactaactaactagttagttagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatat |
451 |
Q |
| |
|
|||||| | ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
43039349 |
gttagttagtaactaactagttagttagtttgttagtggcttgtattgcaagttactcaacttagcctataagtacttatcttttgtattcagttgatat |
43039448 |
T |
|
| Q |
452 |
agattgtatttgtatagcagacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtag |
551 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||| |
|
|
| T |
43039449 |
agattgtat------agcacacatctcatatctctcatattcaatgatagaagagttttatcattcttttgtagtttcctctctaaatgtgagtgtgtag |
43039542 |
T |
|
| Q |
552 |
agatcattctattctttctctaaattatgtatgtgcatgttctatca |
598 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
43039543 |
agatcattctaatatttctctcaattatgtatgtgcatgttctatca |
43039589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 43039323 - 43039359
Alignment:
| Q |
282 |
tgttgaagtataattcatattttaatgttagttagta |
318 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43039323 |
tgttgaagtataattcatattctaatgttagttagta |
43039359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 78 - 598
Target Start/End: Complemental strand, 37748190 - 37747678
Alignment:
| Q |
78 |
attggagcaaaaagttctttttactacaatagttagaagcaagagatgctgattcaaattcattgtcagaagcacaagtagattctggagaatcaagcta |
177 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
37748190 |
attggagcagaaagttcagttttctacaatagttagaagcaagagatgctgattcacattcattatcagaagcacaagtagattctgaagaatcaagcta |
37748091 |
T |
|
| Q |
178 |
gtagcagtattca-------gcaaggcttgagaagaaaagggattatcaagccccatgattttagttttgttccaatttaagatgtttgtagaatttgaa |
270 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
37748090 |
gtagcagtatgaatgatgtagcaaggcttgagaagaaaa----------agcctcgtgattttagttttgttccaatttaagatgttagtagaatctgaa |
37748001 |
T |
|
| Q |
271 |
tcaagggggtgtgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaact |
370 |
Q |
| |
|
| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| | |
|
|
| T |
37748000 |
ttaagggggtgtgttgaagtataattcatattctgatgttagttagtagaggataaatccaactatgtttattggttagttagttagtaagtaactaatt |
37747901 |
T |
|
| Q |
371 |
agttagttagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagc |
469 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||| |
|
|
| T |
37747900 |
agttggttagtttgttagtggcttgtagtgcaagttactcaacttagcctataaatacttggcttttgtattcagttgatataga------ttgtatagc |
37747807 |
T |
|
| Q |
470 |
agacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttc |
569 |
Q |
| |
|
| |||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
37747806 |
aaacatctcatacctctcatattcaataatagaagagttttatcattcctctgtagtttcctctctaagtgtgagtgtgtagagatcattctaatctttc |
37747707 |
T |
|
| Q |
570 |
tctaaattatgtatgtgcatgttctatca |
598 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
37747706 |
tctcgattatgtatgtgcatgttctatca |
37747678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 282 - 598
Target Start/End: Complemental strand, 37749545 - 37749243
Alignment:
| Q |
282 |
tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagt |
381 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
37749545 |
tgttgaagtataattcatattctaatgttagttagtagaggataaatccaactatgtttgttggttagttagttagtaagtaactaactagttagttagt |
37749446 |
T |
|
| Q |
382 |
tcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttagc-tttgtattcagttgatatagattgtatttgtatagcagacatctcat |
480 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
37749445 |
ttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttaacttttgtattcagttgatataga------ttgtatagcacacatc---- |
37749356 |
T |
|
| Q |
481 |
atctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatg |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
37749355 |
-----tcatattcaataatagaagagttttatcattcctttgtagttttctctctaagtgtgagtgtgtagagatcattctaatctttctctcaattatg |
37749261 |
T |
|
| Q |
581 |
tatgtgcatgttctatca |
598 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37749260 |
tatgtgcatgttctatca |
37749243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 420
Target Start/End: Complemental strand, 45809869 - 45809774
Alignment:
| Q |
321 |
ggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagttcgttagaggcttgtagtgcaagttactcaacttagcct |
420 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45809869 |
ggataaatccaactatgtttgttggttagttacttggtaactaactcgttagttagtta----gttagaggcttgtagtgcaagttactcaacttagcct |
45809774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 33829590 - 33829656
Alignment:
| Q |
362 |
taactaactagttagttagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtac |
428 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33829590 |
taactaactagttagttagtttgttagtagcttgtagtgcaagttactcaacttagcctataagtac |
33829656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 282 - 648
Target Start/End: Complemental strand, 33413969 - 33413610
Alignment:
| Q |
282 |
tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagt |
381 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||| |
|
|
| T |
33413969 |
tgttgaagtataattcatattctaat--tagttagttatggataaatccaactatgtttgttggttaattagttagttagtaactaactagttagtcagt |
33413872 |
T |
|
| Q |
382 |
tcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatatagattgtatttgtatagcagacatctcat |
480 |
Q |
| |
|
| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
33413871 |
tagttagtggcttgtagtgcaagttattcaacttaacctataagtacttagcttttgtattcagttgatacagattgtat------agcacacatctcat |
33413778 |
T |
|
| Q |
481 |
atctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaattatg |
580 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33413777 |
atctctcatattcaataatagaagaattttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctcaattatg |
33413678 |
T |
|
| Q |
581 |
tatgtgcatgttctatcaaatatatgtccttagggtggttgaaagccacttttgtgtttggtactcat |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33413677 |
tatgtgcatgttctatcaaatatatgtccttagggtggttgaaagccacttttgtgtttagtactcat |
33413610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 372 - 600
Target Start/End: Original strand, 28028004 - 28028227
Alignment:
| Q |
372 |
gttagttagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttagcttt-gtattcagttgatatagattgtatttgtatagca |
470 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
28028004 |
gttagttagtttgttagtggcttgtagtgcaagttactcaacttagcctataagtacttagcttttgtattcagttgatatagattgtat------agca |
28028097 |
T |
|
| Q |
471 |
gacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttct |
570 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||| |
|
|
| T |
28028098 |
cacatctcatatctctcatattcaataatagaagagttttatcattcttttgtagtttcctctttaagtgtgagtgtgtagagatcattctaatatttct |
28028197 |
T |
|
| Q |
571 |
ctaaattatgtatgtgcatgttctatcaaa |
600 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
28028198 |
ctcaattatgtatgtgcatgttctatcaaa |
28028227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 28027941 - 28028014
Alignment:
| Q |
282 |
tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagtt |
355 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
28027941 |
tgttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgcttgttggttagttagtt |
28028014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 13107483 - 13107410
Alignment:
| Q |
238 |
ttgttccaatttaagatgtttgtagaatttgaatcaagggggtgtgttgaagtataattcatattttaatgtta |
311 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13107483 |
ttgttccaatttaagatgttagaagaatccaaattaagggggtgtgttgaagtataattcatattttaatgtta |
13107410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 479 - 598
Target Start/End: Complemental strand, 13109186 - 13109068
Alignment:
| Q |
479 |
atatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattctattctttctctaaatt |
577 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||||| |||||||||| ||||| | ||||||||| ||| ||||||||||| |||||||| |||| |
|
|
| T |
13109186 |
atatctctcatattcaataata-aagagatttatcattcatttgtagttttctctctaaagtgtgagtatgt-gagatcattcttaactttctctcaatt |
13109089 |
T |
|
| Q |
578 |
atgtatgtgcatgttctatca |
598 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
13109088 |
ctatatgtgcatgttctatca |
13109068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 4659641 - 4659716
Alignment:
| Q |
376 |
gttagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgatata |
452 |
Q |
| |
|
||||||| ||||| | | |||||||||||| |||| ||||||||||||| ||||| | |||||||||| | |||||| |
|
|
| T |
4659641 |
gttagttagttagtgacctgtagtgcaagtaactctacttagcctataaatactt-gttttgtattcaatagatata |
4659716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 597
Target Start/End: Complemental strand, 13107228 - 13107169
Alignment:
| Q |
537 |
agtgtgagtgtgtagagatcattctattctttctctaaattatgtatgtgcatgttctatc |
597 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||| ||| |||||||||||||| |||| |
|
|
| T |
13107228 |
agtgtgagtgtgt-gaaatcattctaatctttctctcgattctgtatgtgcatgttttatc |
13107169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 9e-78; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 282 - 598
Target Start/End: Original strand, 38206825 - 38207133
Alignment:
| Q |
282 |
tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagt |
381 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
38206825 |
tgttgaagtataattaatattctaatgttagttagtagaggataaattcaactatgtttgttggttagttagttag----taactaactagttagttagt |
38206920 |
T |
|
| Q |
382 |
tcgttagaggcttgtagtgcaagttactcaacttagcct---ataagtacttagctttgtattcagttga-tatagattgtatttgtatagcagacatct |
477 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||||| || || ||| ||||||| || |||||| |
|
|
| T |
38206921 |
ttgttagaggcttgtagtgcaagttactcaacttagcttataataagtac--atgtttgtattcagtagattacaga------ttgtataacacacatct |
38207012 |
T |
|
| Q |
478 |
catatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttctctaaatt |
577 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| | ||| | |||||||||||||||||| ||||||||| |||| |
|
|
| T |
38207013 |
tgtatctctcatattcaataatagaagagttttatcattcctttatagttttctctctaaatgtaaatgtgtagagatcattctaatctttctcttaatt |
38207112 |
T |
|
| Q |
578 |
atgtatgtgcatgttctatca |
598 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
38207113 |
atgcatgtgcatgttctatca |
38207133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 371 - 598
Target Start/End: Original strand, 3585452 - 3585672
Alignment:
| Q |
371 |
agttagttagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgat-atagattgtatttgtatagc |
469 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||| ||| | ||||||||| ||| |
|
|
| T |
3585452 |
agttagttagtttgttagaggcttgtagtgcaagttactcaacttagcctatacgtacatg--tttgtattaagtagattacagattgtat------agc |
3585543 |
T |
|
| Q |
470 |
agacatctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattctattctttc |
569 |
Q |
| |
|
| ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
3585544 |
acacatctcatatctcttatattcaataacagaagagttttatcattcctttgtagtttcctctctaagtgtgagtgtgtagagatcattctaatctttc |
3585643 |
T |
|
| Q |
570 |
tctaaattatgtatgtgcatgttctatca |
598 |
Q |
| |
|
||| |||||||||| |||||||||||||| |
|
|
| T |
3585644 |
tctcaattatgtatatgcatgttctatca |
3585672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 190 - 354
Target Start/End: Original strand, 31477851 - 31478014
Alignment:
| Q |
190 |
agcaaggcttgagaagaaaagggattatcaagccccatgattttagttttgttccaatttaagatgtttgtagaatttgaatcaagggggtgtgttgaag |
289 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| | |||||||||||||||||||| |||||||||| ||||||| ||||| |||| |||||||||||| |
|
|
| T |
31477851 |
agcaaggcttgagaagaaaatg-attatcaagcctcgtgattttagttttgttccaagttaagatgttagtagaatctgaattaaggaggtgtgttgaag |
31477949 |
T |
|
| Q |
290 |
tataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagt |
354 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||| |
|
|
| T |
31477950 |
tataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggttagttagt |
31478014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 280 - 358
Target Start/End: Original strand, 3584471 - 3584549
Alignment:
| Q |
280 |
tgtgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagt |
358 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
3584471 |
tgtgttgaagtataattcatattctaatgttagtttgtagaggataaattcaactatgtttgttggttagttagttagt |
3584549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 321 - 420
Target Start/End: Original strand, 7493583 - 7493674
Alignment:
| Q |
321 |
ggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagttcgttagaggcttgtagtgcaagttactcaacttagcct |
420 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7493583 |
ggataaattcaactatgtttgttggttagttacttagtaactaacta--------gttagttagttagaggcttgtagtgcaagttactcaacttagcct |
7493674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 430
Target Start/End: Original strand, 929872 - 929951
Alignment:
| Q |
351 |
tagttagtaactaactaactagttagttagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtactt |
430 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| ||| | ||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
929872 |
tagttagttagtaactaactagttagttagtttgtttgtggcttgtagtgcaagaaactccacttagcctataagtactt |
929951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 561
Target Start/End: Original strand, 31478036 - 31478107
Alignment:
| Q |
490 |
attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattct |
561 |
Q |
| |
|
||||||||||| |||| |||||||||| ||| |||| ||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
31478036 |
attcaataata-aagacttttatcattattttatagtctcccctctaaagtgtgagtgtgtagagatcattct |
31478107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 282 - 417
Target Start/End: Original strand, 31798779 - 31798913
Alignment:
| Q |
282 |
tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagt |
381 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| | | | |||||||| |||||||||||||||||||| |||||| | | ||||||||||||||||| || |
|
|
| T |
31798779 |
tgttgaagtataattcatattctaatattagtaatt-gtggataaattcaactatgtttgttggttagttagttatttagtaactaactagttagtttgt |
31798877 |
T |
|
| Q |
382 |
tcgttagaggcttgtagtgcaagttactcaacttag |
417 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
31798878 |
ttgttagtggcttgtagtgcaagttactcaatttag |
31798913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 561
Target Start/End: Original strand, 34391113 - 34391199
Alignment:
| Q |
476 |
ctcatatctttcatattcaataatagaagagtttt-atcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatcattct |
561 |
Q |
| |
|
||||||||| ||| ||||||||||| ||| ||||| |||||||||||||||||||||||| | ||||||||||||| | ||||||||| |
|
|
| T |
34391113 |
ctcatatctctcacattcaataata-aagtgtttttatcattcctttgtagtttcctctctaaagtgtgagtgtgtggcgatcattct |
34391199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 34486445 - 34486361
Alignment:
| Q |
476 |
ctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctc-tcatagtgtgagtgtgtagagatcattc |
560 |
Q |
| |
|
||||||||| ||| ||| ||||||| |||||||||||||||| |||||||||||||| | | | ||||||||||| |||||||||| |
|
|
| T |
34486445 |
ctcatatctctcacatttaataata-aagagttttatcattcttttgtagtttcctctttaaaatgtgagtgtgtggagatcattc |
34486361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 53611216 - 53611292
Alignment:
| Q |
282 |
tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagt |
358 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53611216 |
tgttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggttagttagttagt |
53611292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 476 - 555
Target Start/End: Original strand, 53611372 - 53611450
Alignment:
| Q |
476 |
ctcatatctttcatattcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagat |
555 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
53611372 |
ctcatatctctcaaattcaataata-aagagttttatcattcctttgtagtttcctctctaaatgtgagtgtgtagagat |
53611450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 452
Target Start/End: Complemental strand, 29298626 - 29298553
Alignment:
| Q |
378 |
tagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttagctttgtattcagttgatata |
452 |
Q |
| |
|
||||| ||||| ||| ||||| |||||| |||||||||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
29298626 |
tagttagttagcggcatgtagagcaagtaactcaacttagcctataagtactt-gttttgtattcaattgatata |
29298553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 370 - 432
Target Start/End: Original strand, 53611281 - 53611343
Alignment:
| Q |
370 |
tagttagttagttcgttagaggcttgtagtgcaagttactcaacttagcctataagtacttag |
432 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
53611281 |
tagttagttagttggttagtgacttgtagtgcaagtaactccacttagcctatgagtacttag |
53611343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 321 - 449
Target Start/End: Complemental strand, 4810117 - 4809991
Alignment:
| Q |
321 |
ggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagttcgttagaggcttgtagtgcaagttactcaacttagcct |
420 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||| || | |||||||||| |||||||||| || | | ||||| |||||||| ||| ||||||||| |
|
|
| T |
4810117 |
ggataaattcaactatgcttgttgcttagttagtttgttagtaactaactacttagttagttggtcaatgacttgttgtgcaagtaactttacttagcct |
4810018 |
T |
|
| Q |
421 |
ataagtacttagctttgtattcagttgat |
449 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
4810017 |
ataagtactt--gtttgtattcagttgat |
4809991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 561
Target Start/End: Complemental strand, 496648 - 496582
Alignment:
| Q |
492 |
tcaataatagaagagttttatcattcctttgtagtttcctctcatagtgtgagtgtgtagagatcattct |
561 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
496648 |
tcaataata-aagagttttatttttcctttgtagtttcttctac--gtgtgagtgtgtagagatcattct |
496582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 598
Target Start/End: Original strand, 54017245 - 54017291
Alignment:
| Q |
552 |
agatcattctattctttctctaaattatgtatgtgcatgttctatca |
598 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
54017245 |
agatcattctaatctttctctcaattttgtatgtgcgtgttctatca |
54017291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 496800 - 496764
Alignment:
| Q |
281 |
gtgttgaagtataattcatattttaatgttagttagt |
317 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
496800 |
gtgttgaagtattattcatattctaatgttagttagt |
496764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 557
Target Start/End: Complemental strand, 17130 - 17063
Alignment:
| Q |
490 |
attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatca |
557 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| ||||||| |
|
|
| T |
17130 |
attcaataata-aagagttttatcattcctttgtagtttcctctctaaagtgtgtgtgtgtggagatca |
17063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 490 - 557
Target Start/End: Complemental strand, 1148 - 1081
Alignment:
| Q |
490 |
attcaataatagaagagttttatcattcctttgtagtttcctctc-atagtgtgagtgtgtagagatca |
557 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| ||||||| |
|
|
| T |
1148 |
attcaataata-aagagttttatcattcctttgtagtttcctctctaaagtgtgtgtgtgtggagatca |
1081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 6600779 - 6600746
Alignment:
| Q |
321 |
ggataaatccaactatgtttgttggttagatagt |
354 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
6600779 |
ggataaatccaactatgtttgttggttagttagt |
6600746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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