View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7799_low_1 (Length: 740)

Name: NF7799_low_1
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7799_low_1
NF7799_low_1
[»] chr8 (6 HSPs)
chr8 (18-382)||(14196405-14196769)
chr8 (359-723)||(14196405-14196769)
chr8 (18-383)||(43040918-43041275)
chr8 (358-723)||(43040918-43041275)
chr8 (282-318)||(43039323-43039359)
chr8 (423-459)||(43039323-43039359)
[»] chr7 (6 HSPs)
chr7 (359-663)||(37747889-37748190)
chr7 (78-382)||(37747889-37748190)
chr7 (359-459)||(37749445-37749545)
chr7 (282-382)||(37749445-37749545)
chr7 (358-420)||(45809807-45809869)
chr7 (321-383)||(45809807-45809869)
[»] chr1 (8 HSPs)
chr1 (190-354)||(31477851-31478014)
chr1 (387-551)||(31477851-31478014)
chr1 (282-383)||(38206825-38206926)
chr1 (358-459)||(38206825-38206926)
chr1 (280-358)||(3584471-3584549)
chr1 (383-461)||(3584471-3584549)
chr1 (321-380)||(7493583-7493642)
chr1 (361-420)||(7493583-7493642)
[»] chr4 (2 HSPs)
chr4 (282-358)||(53611216-53611292)
chr4 (383-459)||(53611216-53611292)
[»] chr2 (6 HSPs)
chr2 (358-459)||(33413870-33413969)
chr2 (282-383)||(33413870-33413969)
chr2 (282-355)||(28027941-28028014)
chr2 (386-459)||(28027941-28028014)
chr2 (430-503)||(13107410-13107483)
chr2 (238-311)||(13107410-13107483)
[»] chr6 (2 HSPs)
chr6 (282-378)||(31798779-31798874)
chr6 (363-459)||(31798779-31798874)
[»] chr5 (2 HSPs)
chr5 (387-420)||(6600746-6600779)
chr5 (321-354)||(6600746-6600779)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 14196405 - 14196769
Alignment:
Q  18 attctgaagtgcaaaaattgtgcaggtgaaacattatgaagttttagaaatgcagaaagtattggagcaaaaagttctttttactacaatagttagaagc 117  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||||    
T  14196405 attctgaagtgcgaaaattgtgcaggtgaaacattctgaagttttagaaatgcagaaaggattggaacaaaaagttctatttactacaataattagaagc 14196504  T
Q  118 aagagatgctgattcaaattcattgtcagaagcacaagtagattctggagaatcaagctagtagcagtattcagcaaggcttgagaagaaaagggattat 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14196505 aagagatgctgattcaaattcattgtcagatgcacaagtagattctggagaatcaagctagtagcagtatgcagcaaggcttgagaagaaaagggattat 14196604  T
Q  218 caagccccatgattttagttttgttccaatttaagatgtttgtagaatttgaatcaagggggtgtgttgaagtataattcatattttaatgttagttagt 317  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  14196605 caagccccgtgattttagttttgttccaatttaagatgtttgtagaatctgaattaagggggtgtgttgaagtataattcatattctaatgttagttagt 14196704  T
Q  318 agaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagtt 382  Q
    | |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||    
T  14196705 ataggataaatccaactatgtttgttggttagttggttagtaagtaactaactagttagttagtt 14196769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 359 - 723
Target Start/End: Complemental strand, 14196769 - 14196405
Alignment:
Q  359 aactaactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaac 458  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  14196769 aactaactaactagttagttacttactaaccaactaaccaacaaacatagttggatttatcctatactaactaacattagaatatgaattatacttcaac 14196670  T
Q  459 acacccccttgattcaaattctacaaacatcttaaattggaacaaaactaaaatcatggggcttgataatcccttttcttctcaagccttgctgaatact 558  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  14196669 acacccccttaattcagattctacaaacatcttaaattggaacaaaactaaaatcacggggcttgataatcccttttcttctcaagccttgctgcatact 14196570  T
Q  559 gctactagcttgattctccagaatctacttgtgcttctgacaatgaatttgaatcagcatctcttgcttctaactattgtagtaaaaagaactttttgct 658  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |    
T  14196569 gctactagcttgattctccagaatctacttgtgcatctgacaatgaatttgaatcagcatctcttgcttctaattattgtagtaaatagaactttttgtt 14196470  T
Q  659 ccaatactttctgcatttctaaaacttcataatgtttcacctgcacaatttttgcacttcagaat 723  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  14196469 ccaatcctttctgcatttctaaaacttcagaatgtttcacctgcacaattttcgcacttcagaat 14196405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 43040918 - 43041275
Alignment:
Q  18 attctgaagtgcaaaaattgtgcaggtgaaacattatgaagttttagaaatgcagaaagtattggagcaaaaagttctttttactacaatagttagaagc 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||  ||| |||||||||||||||||    
T  43040918 attctgaagtgcaaaaattgtgcaggtgaaacattctgaagttttagaaatgcagaaaggattggagcagaaagttcagttttctacaatagttagaagc 43041017  T
Q  118 aagagatgctgattcaaattcattgtcagaagcacaagtagattctggagaatcaagctagtagcagt-------attcagcaaggcttgagaagaaaag 210  Q
    |||||||||||||||| | ||||| ||||||||||||||||||| || |||||| |||||||||||||       ||  |||||||||| ||||||||      
T  43041018 aagagatgctgattcacaatcattatcagaagcacaagtagattatgaagaatctagctagtagcagtatgaatgatgtagcaaggcttaagaagaaa-- 43041115  T
Q  211 ggattatcaagccccatgattttagttttgttccaatttaagatgtttgtagaatttgaatcaagggggtgtgttgaagtataattcatattttaatgtt 310  Q
            ||||| | ||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  43041116 --------aagcctcgtgattttag-tttgttccaatttaagatgttagtagaatctgaattaagggggtgtgttgaagtataattcatattctaatgtt 43041206  T
Q  311 agttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagtta 383  Q
    |||||||   ||||| ||||||||||| ||||||||    |||||||||||||||||  ||||||||| ||||    
T  43041207 agttagttatggatagatccaactatgcttgttggt----tagttagtaactaactagttagttagtttgtta 43041275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 358 - 723
Target Start/End: Complemental strand, 43041275 - 43040918
Alignment:
Q  358 taactaactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaa 457  Q
    |||| |||||||||  |||||||||||||||||    |||||||| ||||||||||| |||||   |||||||||||||| |||||||||||||||||||    
T  43041275 taacaaactaactaactagttagttactaacta----accaacaagcatagttggatctatccataactaactaacattagaatatgaattatacttcaa 43041180  T
Q  458 cacacccccttgattcaaattctacaaacatcttaaattggaacaaaactaaaatcatggggcttgataatcccttttcttctcaagccttgctgaat-- 555  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||| | |||||          |||||||| ||||||||||  ||      
T  43041179 cacacccccttaattcagattctactaacatcttaaattggaacaaa-ctaaaatcacgaggctt----------tttcttcttaagccttgctacatca 43041091  T
Q  556 -----actgctactagcttgattctccagaatctacttgtgcttctgacaatgaatttgaatcagcatctcttgcttctaactattgtagtaaaaagaac 650  Q
         ||||||||||||| |||||| || ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||  ||||    
T  43041090 ttcatactgctactagctagattcttcataatctacttgtgcttctgataatgattgtgaatcagcatctcttgcttctaactattgtagaaaactgaac 43040991  T
Q  651 tttttgctccaatactttctgcatttctaaaacttcataatgtttcacctgcacaatttttgcacttcagaat 723  Q
    ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43040990 tttctgctccaatcctttctgcatttctaaaacttcagaatgtttcacctgcacaatttttgcacttcagaat 43040918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 43039323 - 43039359
Alignment:
Q  282 tgttgaagtataattcatattttaatgttagttagta 318  Q
    ||||||||||||||||||||| |||||||||||||||    
T  43039323 tgttgaagtataattcatattctaatgttagttagta 43039359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 459
Target Start/End: Complemental strand, 43039359 - 43039323
Alignment:
Q  423 tactaactaacattaaaatatgaattatacttcaaca 459  Q
    ||||||||||||||| |||||||||||||||||||||    
T  43039359 tactaactaacattagaatatgaattatacttcaaca 43039323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 5e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 359 - 663
Target Start/End: Original strand, 37747889 - 37748190
Alignment:
Q  359 aactaactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaac 458  Q
    ||||||| ||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  37747889 aactaaccaactaattagttacttactaactaactaaccaataaacatagttggatttatcctctactaactaacatcagaatatgaattatacttcaac 37747988  T
Q  459 acacccccttgattcaaattctacaaacatcttaaattggaacaaaactaaaatcatggggcttgataatcccttttcttctcaagccttgc-------t 551  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| | ||||          |||||||||||||||||||       |    
T  37747989 acacccccttaattcagattctactaacatcttaaattggaacaaaactaaaatcacgaggct----------ttttcttctcaagccttgctacatcat 37748078  T
Q  552 gaatactgctactagcttgattctccagaatctacttgtgcttctgacaatgaatttgaatcagcatctcttgcttctaactattgtagtaaaaagaact 651  Q
      |||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||  |||||    
T  37748079 tcatactgctactagcttgattcttcagaatctacttgtgcttctgataatgaatgtgaatcagcatctcttgcttctaactattgtagaaaactgaact 37748178  T
Q  652 ttttgctccaat 663  Q
    || |||||||||    
T  37748179 ttctgctccaat 37748190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 78 - 382
Target Start/End: Complemental strand, 37748190 - 37747889
Alignment:
Q  78 attggagcaaaaagttctttttactacaatagttagaagcaagagatgctgattcaaattcattgtcagaagcacaagtagattctggagaatcaagcta 177  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  37748190 attggagcagaaagttcagttttctacaatagttagaagcaagagatgctgattcacattcattatcagaagcacaagtagattctgaagaatcaagcta 37748091  T
Q  178 gtagcagtattca-------gcaaggcttgagaagaaaagggattatcaagccccatgattttagttttgttccaatttaagatgtttgtagaatttgaa 270  Q
    ||||||||||  |       |||||||||||||||||||          |||| | ||||||||||||||||||||||||||||||| ||||||| ||||    
T  37748090 gtagcagtatgaatgatgtagcaaggcttgagaagaaaa----------agcctcgtgattttagttttgttccaatttaagatgttagtagaatctgaa 37748001  T
Q  271 tcaagggggtgtgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaact 370  Q
    | |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |    
T  37748000 ttaagggggtgtgttgaagtataattcatattctgatgttagttagtagaggataaatccaactatgtttattggttagttagttagtaagtaactaatt 37747901  T
Q  371 agttagttagtt 382  Q
    |||| |||||||    
T  37747900 agttggttagtt 37747889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 359 - 459
Target Start/End: Original strand, 37749445 - 37749545
Alignment:
Q  359 aactaactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaac 458  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37749445 aactaactaactagttagttacttactaactaactaaccaacaaacatagttggatttatcctctactaactaacattagaatatgaattatacttcaac 37749544  T
Q  459 a 459  Q
    |    
T  37749545 a 37749545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 37749545 - 37749445
Alignment:
Q  282 tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagt 381  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  37749545 tgttgaagtataattcatattctaatgttagttagtagaggataaatccaactatgtttgttggttagttagttagtaagtaactaactagttagttagt 37749446  T
Q  382 t 382  Q
    |    
T  37749445 t 37749445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 420
Target Start/End: Original strand, 45809807 - 45809869
Alignment:
Q  358 taactaactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcc 420  Q
    ||||||||||||||   |||||||||| || || |||||||||||||||||||||||||||||    
T  45809807 taactaactaactaacgagttagttaccaagtaactaaccaacaaacatagttggatttatcc 45809869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 321 - 383
Target Start/End: Complemental strand, 45809869 - 45809807
Alignment:
Q  321 ggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagtta 383  Q
    ||||||||||||||||||||||||||||| || || ||||||||||   ||||||||||||||    
T  45809869 ggataaatccaactatgtttgttggttagttacttggtaactaactcgttagttagttagtta 45809807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 190 - 354
Target Start/End: Original strand, 31477851 - 31478014
Alignment:
Q  190 agcaaggcttgagaagaaaagggattatcaagccccatgattttagttttgttccaatttaagatgtttgtagaatttgaatcaagggggtgtgttgaag 289  Q
    |||||||||||||||||||| | ||||||||||| | |||||||||||||||||||| |||||||||| ||||||| ||||| |||| ||||||||||||    
T  31477851 agcaaggcttgagaagaaaatg-attatcaagcctcgtgattttagttttgttccaagttaagatgttagtagaatctgaattaaggaggtgtgttgaag 31477949  T
Q  290 tataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagt 354  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  31477950 tataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggttagttagt 31478014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 387 - 551
Target Start/End: Complemental strand, 31478014 - 31477851
Alignment:
Q  387 actatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaacacacccccttgattcaaattctacaaac 486  Q
    |||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||| |||    
T  31478014 actaactaaccaacaaacatagttggatttatccacaactaactaacattagaatatgaattatacttcaacacacctccttaattcagattctactaac 31477915  T
Q  487 atcttaaattggaacaaaactaaaatcatggggcttgataatcccttttcttctcaagccttgct 551  Q
    ||||||| |||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||    
T  31477914 atcttaacttggaacaaaactaaaatcacgaggcttgataat-cattttcttctcaagccttgct 31477851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 282 - 383
Target Start/End: Original strand, 38206825 - 38206926
Alignment:
Q  282 tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagt 381  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||||| ||    
T  38206825 tgttgaagtataattaatattctaatgttagttagtagaggataaattcaactatgtttgttggttagttagttagtaactaactagttagttagtttgt 38206924  T
Q  382 ta 383  Q
    ||    
T  38206925 ta 38206926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 358 - 459
Target Start/End: Complemental strand, 38206926 - 38206825
Alignment:
Q  358 taactaactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaa 457  Q
    |||| |||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||    
T  38206926 taacaaactaactaactagttagttactaactaactaaccaacaaacatagttgaatttatcctctactaactaacattagaatattaattatacttcaa 38206827  T
Q  458 ca 459  Q
    ||    
T  38206826 ca 38206825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 280 - 358
Target Start/End: Original strand, 3584471 - 3584549
Alignment:
Q  280 tgtgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagt 358  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  3584471 tgtgttgaagtataattcatattctaatgttagtttgtagaggataaattcaactatgtttgttggttagttagttagt 3584549  T

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Target: chr1; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 383 - 461
Target Start/End: Complemental strand, 3584549 - 3584471
Alignment:
Q  383 actaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaacaca 461  Q
    |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  3584549 actaactaactaaccaacaaacatagttgaatttatcctctacaaactaacattagaatatgaattatacttcaacaca 3584471  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 321 - 380
Target Start/End: Original strand, 7493583 - 7493642
Alignment:
Q  321 ggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttag 380  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||  |||||||||||    
T  7493583 ggataaattcaactatgtttgttggttagttacttagtaactaactagttagttagttag 7493642  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 7493642 - 7493583
Alignment:
Q  361 ctaactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcc 420  Q
    |||||||||||  |||||||||||||| || |||||||||||||||||||| ||||||||    
T  7493642 ctaactaactaactagttagttactaagtaactaaccaacaaacatagttgaatttatcc 7493583  T

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Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 53611216 - 53611292
Alignment:
Q  282 tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagt 358  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  53611216 tgttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgtttgttggttagttagttagt 53611292  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 383 - 459
Target Start/End: Complemental strand, 53611292 - 53611216
Alignment:
Q  383 actaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaaca 459  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||    
T  53611292 actaactaactaaccaacaaacatagttggatttatccacaactaactaacattagaatatgaattatacttcaaca 53611216  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 358 - 459
Target Start/End: Original strand, 33413870 - 33413969
Alignment:
Q  358 taactaactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaa 457  Q
    ||||| |||||||||||||||| | ||||||||  ||||||||||||||||||||||||||||   ||||||||  |||| |||||||||||||||||||    
T  33413870 taactgactaactagttagttactaactaactaattaaccaacaaacatagttggatttatccataactaacta--attagaatatgaattatacttcaa 33413967  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 282 - 383
Target Start/End: Complemental strand, 33413969 - 33413870
Alignment:
Q  282 tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagttagt 381  Q
    ||||||||||||||||||||| ||||  ||||||||   ||||||||||||||||||||||||||||  |||||||| | |||||||||||||||| |||    
T  33413969 tgttgaagtataattcatattctaat--tagttagttatggataaatccaactatgtttgttggttaattagttagttagtaactaactagttagtcagt 33413872  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 28027941 - 28028014
Alignment:
Q  282 tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagtt 355  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||||| |||||    
T  28027941 tgttgaagtataattcatattctaatgttagttagttgtggataaatccaactatgcttgttggttagttagtt 28028014  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 386 - 459
Target Start/End: Complemental strand, 28028014 - 28027941
Alignment:
Q  386 aactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaaca 459  Q
    ||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||||||    
T  28028014 aactaactaaccaacaagcatagttggatttatccacaactaactaacattagaatatgaattatacttcaaca 28027941  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 430 - 503
Target Start/End: Original strand, 13107410 - 13107483
Alignment:
Q  430 taacattaaaatatgaattatacttcaacacacccccttgattcaaattctacaaacatcttaaattggaacaa 503  Q
    ||||||||||||||||||||||||||||||||||||||| |||   ||||| | ||||||||||||||||||||    
T  13107410 taacattaaaatatgaattatacttcaacacacccccttaatttggattcttctaacatcttaaattggaacaa 13107483  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 13107483 - 13107410
Alignment:
Q  238 ttgttccaatttaagatgtttgtagaatttgaatcaagggggtgtgttgaagtataattcatattttaatgtta 311  Q
    |||||||||||||||||||| | |||||   ||| |||||||||||||||||||||||||||||||||||||||    
T  13107483 ttgttccaatttaagatgttagaagaatccaaattaagggggtgtgttgaagtataattcatattttaatgtta 13107410  T

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Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 282 - 378
Target Start/End: Original strand, 31798779 - 31798874
Alignment:
Q  282 tgttgaagtataattcatattttaatgttagttagtagaggataaatccaactatgtttgttggttagatagttagtaactaactaactagttagtt 378  Q
    ||||||||||||||||||||| |||| ||||| | | | |||||||| |||||||||||||||||||| |||||| | | |||||||||||||||||    
T  31798779 tgttgaagtataattcatattctaatattagtaatt-gtggataaattcaactatgtttgttggttagttagttatttagtaactaactagttagtt 31798874  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 363 - 459
Target Start/End: Complemental strand, 31798874 - 31798779
Alignment:
Q  363 aactaactagttagttagttactaactatctaaccaacaaacatagttggatttatcctctactaactaacattaaaatatgaattatacttcaaca 459  Q
    ||||||||||||||||| | | |||||| |||||||||||||||||||| |||||||| | | | ||||| |||| |||||||||||||||||||||    
T  31798874 aactaactagttagttactaaataactaactaaccaacaaacatagttgaatttatccac-aattactaatattagaatatgaattatacttcaaca 31798779  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 6600746 - 6600779
Alignment:
Q  387 actatctaaccaacaaacatagttggatttatcc 420  Q
    |||| |||||||||||||||||||||||||||||    
T  6600746 actaactaaccaacaaacatagttggatttatcc 6600779  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 6600779 - 6600746
Alignment:
Q  321 ggataaatccaactatgtttgttggttagatagt 354  Q
    ||||||||||||||||||||||||||||| ||||    
T  6600779 ggataaatccaactatgtttgttggttagttagt 6600746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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