View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_low_14 (Length: 325)
Name: NF7799_low_14
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 53562549 - 53562255
Alignment:
| Q |
13 |
agaaagcataagagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacaacctcaatgaacacagccagacaccacgcagcagcagctct |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53562549 |
agaaagcataagagctgctgcaaacagaaaaaccagcagcaccacaacagaactgcacagcctcaatgaacacagccagacaccacgcagcagcagctct |
53562450 |
T |
|
| Q |
113 |
cccaaacaaaacaacctcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53562449 |
cccaaacaaaacaacctcaccgcatcaaacagtccttgggattccacttccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacct |
53562350 |
T |
|
| Q |
213 |
ccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataac |
311 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53562349 |
ccaagacaaaaccttgac----tgcaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataac |
53562255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 308
Target Start/End: Original strand, 34821223 - 34821403
Alignment:
| Q |
129 |
tcaccgcatcaaacag-tccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaacctt |
227 |
Q |
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||||||||||||||| ||||| |||||||| |||| ||||| |||||| | | ||||| | |||| || |||| ||||||||| |||||||||| |
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| T |
34821223 |
tcaccgcatcaaacaaatcctttggattccagctccattcgtaaaacaaacaagacggcacatccaatcgacctaaacaccacctccaccacaaaacctt |
34821322 |
T |
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| Q |
228 |
gacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaat |
308 |
Q |
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| T |
34821323 |
tattgattccaacagtgcctcaaaatctaaaacagcattgttaaaaataatatcattcctcgctttccatatgctccaaat |
34821403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 308
Target Start/End: Complemental strand, 4903993 - 4903814
Alignment:
| Q |
129 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
228 |
Q |
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|||||||| |||||| ||||| ||||||| ||||||| || ||||||||||| | | || || || |||||| ||| ||||||||||| ||||| |
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| T |
4903993 |
tcaccgcaacaaacaatccttcagattccaattccactcataaaacaaaaacgcgtacgaattcaacctacccaaaaaccatctccaagacaacacctta |
4903894 |
T |
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| Q |
229 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaat |
308 |
Q |
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|||||||||||||| ||||| || || | ||| |||| |||||||||||||| |||||||||||||| ||||||||||| |
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| T |
4903893 |
acagattccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaat |
4903814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 308
Target Start/End: Original strand, 22153564 - 22153743
Alignment:
| Q |
129 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
228 |
Q |
| |
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|||||||| |||||| |||| |||||||| ||||||| || |||||| |||| || | || || || |||||| |||||||||||||| ||||| |
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| T |
22153564 |
tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta |
22153663 |
T |
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| Q |
229 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaat |
308 |
Q |
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| |||||||||||| | ||| || || | ||| ||| ||||||||| |||| |||||||||||||| ||||||||||| |
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| T |
22153664 |
aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaat |
22153743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 308
Target Start/End: Original strand, 22209479 - 22209658
Alignment:
| Q |
129 |
tcaccgcatcaaacagtccttgggattccacgtccactcgtagaacaaaaacgccggcaactttaatcttcccaaactccacctccaagacaaaaccttg |
228 |
Q |
| |
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|||||||| |||||| |||| |||||||| ||||||| || |||||| |||| || | || || || |||||| |||||||||||||| ||||| |
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| T |
22209479 |
tcaccgcaacaaacaaaccttcggattccaattccactcataaaacaaacacgcgtgcgaattcaacctacccaaaaatcacctccaagacaacacctta |
22209578 |
T |
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| Q |
229 |
acagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaat |
308 |
Q |
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| |||||||||||| | ||| || || | ||| ||| ||||||||| |||| |||||||||||||| ||||||||||| |
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| T |
22209579 |
aaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaat |
22209658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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