View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7799_low_15 (Length: 324)

Name: NF7799_low_15
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7799_low_15
NF7799_low_15
[»] chr5 (2 HSPs)
chr5 (20-177)||(25588483-25588639)
chr5 (20-146)||(25566268-25566394)
[»] chr2 (1 HSPs)
chr2 (20-112)||(13776017-13776109)
[»] chr1 (2 HSPs)
chr1 (20-89)||(26884093-26884162)
chr1 (28-85)||(11845320-11845377)
[»] chr3 (1 HSPs)
chr3 (50-89)||(21815526-21815565)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 25588483 - 25588639
Alignment:
Q  20 tgaacctctatattattgtttgaactatgaaatctatgatgtcttcttttaacgcaatttgaactatgttcgttaagtatattttgtgcttaaggatttt 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||| ||| |||||||||| |||| |||||||||    
T  25588483 tgaacctctatataattgtttgaactatgaaatctatgatgtcttcttttaaaacaatttgaattatgtt-gttgagtatattttatgctaaaggatttt 25588581  T
Q  120 caatgcccgatcaactttgaactatgtaatctattacgtaatacttatcaaatattat 177  Q
    ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25588582 caacgccggatcaactttgaactatgtaatctattacataatacttatcaaatattat 25588639  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 25566268 - 25566394
Alignment:
Q  20 tgaacctctatattattgtttgaactatgaaatctatgatgtcttcttttaacgcaatttgaactatgttcgttaagtatattttgtgcttaaggatttt 119  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||||    
T  25566268 tgaacctctatattattgtttgaaatatgaaatctatgatgttttcttttaaagcaattttaactatgttcgttgattatattttgtgcttaaggatttt 25566367  T
Q  120 caatgcccgatcaactttgaactatgt 146  Q
    ||| | |||||||||||||||||||||    
T  25566368 caaagtccgatcaactttgaactatgt 25566394  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 13776109 - 13776017
Alignment:
Q  20 tgaacctctatattattgtttgaactatgaaatctatgatgtcttcttttaacgcaatttgaactatgttcgttaagtatattttgtgcttaa 112  Q
    |||| ||||||| |||||||||||| ||| ||||||||||||| |||| ||| | |||||||||||||||  || |||||||  |||||||||    
T  13776109 tgaatctctataatattgtttgaaccatgtaatctatgatgtcatcttctaatgtaatttgaactatgtttatttagtatatcctgtgcttaa 13776017  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 26884093 - 26884162
Alignment:
Q  20 tgaacctctatattattgtttgaactatgaaatctatgatgtcttcttttaacgcaatttgaactatgtt 89  Q
    ||||||||||||  |||||| |||| ||| |||| |||| |||||||||||| |||||||||| ||||||    
T  26884093 tgaacctctataaaattgttcgaaccatgtaatccatgaagtcttcttttaatgcaatttgaattatgtt 26884162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 11845377 - 11845320
Alignment:
Q  28 tatattattgtttgaactatgaaatctatgatgtcttcttttaacgcaatttgaacta 85  Q
    |||| |||||||||||| ||| |||||||||| |||| | |||| |||||||||||||    
T  11845377 tataatattgtttgaaccatgtaatctatgatatcttatattaatgcaatttgaacta 11845320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 21815526 - 21815565
Alignment:
Q  50 aatctatgatgtcttcttttaacgcaatttgaactatgtt 89  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  21815526 aatctatgatgtcctcttttaatgcaatttgaactatgtt 21815565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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