View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7799_low_17 (Length: 306)

Name: NF7799_low_17
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7799_low_17
NF7799_low_17
[»] chr4 (3 HSPs)
chr4 (17-288)||(6671571-6671844)
chr4 (114-292)||(6667901-6668079)
chr4 (17-113)||(6668117-6668214)
[»] chr8 (2 HSPs)
chr8 (115-278)||(21346870-21347032)
chr8 (17-113)||(21346734-21346831)
[»] scaffold0002 (1 HSPs)
scaffold0002 (114-193)||(448521-448597)
[»] chr7 (2 HSPs)
chr7 (114-144)||(31206915-31206945)
chr7 (113-141)||(31210309-31210337)
[»] chr2 (1 HSPs)
chr2 (114-144)||(32424792-32424822)
[»] scaffold0933 (1 HSPs)
scaffold0933 (114-146)||(1346-1378)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 6671844 - 6671571
Alignment:
Q  17 agtctaagcatttatactcccatttgaaacggtaatttagtcacatgaccnnnnnnnn-gcaactgaaacaaaattaagaaggagttcatgcctagttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| |||||||||||||||||||||||||||||||||||    
T  6671844 agtctaagcatttatactcccatttgaaacggtaatttagtcacatgaccttttattttgcaaccgaaacaaaattaagaaggagttcatgcctagttca 6671745  T
Q  116 tgtgttaattacttcctaattataaggaaactaccaagcttgcacacaagaagaagagaactcacggtcc-tttgttttgtacagtaggaaaaatcatac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  6671744 tgtgttaattacttcctaattataaggaaactaccaagcttgcacacaagaagaagaaaactcacggtccttttgttttgtacagtaggaaaaatcatac 6671645  T
Q  215 ttggaaaatatatagatgaacctgcacatagtatatttacatatactctctcacttcctattttctctgcacat 288  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6671644 ttgaaaaatatatagatgaacctgcacatagtatatttacatatactctctcacttcctattttctctacacat 6671571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 114 - 292
Target Start/End: Complemental strand, 6668079 - 6667901
Alignment:
Q  114 catgtgttaattacttcctaattataaggaaactaccaagcttgcacacaagaagaagagaactcacggtcctttgttttgtacagtaggaaaaatcata 213  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6668079 catgtgttaattacttcctaattataaggaaattaccaagcttgcacacaagaagaagacaactcacggtcctttgttttgtacagtaggaaaaatcata 6667980  T
Q  214 cttggaaaatatatagatgaacctgcacatagtatatttacatatactctctcacttcctattttctctgcacatactt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  6667979 cttggaaaatatatagatgaacctgcacatagtatatttacatatattctctcacttcctattttctctacacatactt 6667901  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 6668214 - 6668117
Alignment:
Q  17 agtctaagcatttatactcccatttgaaacggtaatttagtcacatgacc-nnnnnnnngcaactgaaacaaaattaagaaggagttcatgcctagtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| |||||||||||||||||||||||||||||||||    
T  6668214 agtctaagcatttatactcccatttgaaacggtaatttagtcacatgaccttttattttgcaaccgaaacaaaattaagaaggagttcatgcctagtt 6668117  T

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Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 115 - 278
Target Start/End: Original strand, 21346870 - 21347032
Alignment:
Q  115 atgtgttaattacttcctaattataaggaaactaccaagcttgcacacaagaagaagagaactcacggtcctttgttttgtacagtaggaaaaatcatac 214  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||| ||||||||| ||||||||| |||||    
T  21346870 atgtgttaattacttcctcattataaggaaactaacaagcctgcacacaagaagaaaa-aactcacggtcctttattttgtacactaggaaaaagcatac 21346968  T
Q  215 ttggaaaatatatagatgaacctgcacatagtatatttacatatactctctcacttcctatttt 278  Q
    ||| |||||||||||||||||||||||||||||||  | | |||| ||||||||||| ||||||    
T  21346969 ttgaaaaatatatagatgaacctgcacatagtatacattcgtataatctctcacttcatatttt 21347032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 21346734 - 21346831
Alignment:
Q  17 agtctaagcatttatactcccatttgaaacggtaatttagtcacatgacc-nnnnnnnngcaactgaaacaaaattaagaaggagttcatgcctagtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| |||||||| ||||||||||||| ||||||||||    
T  21346734 agtctaagcatttatactcccatttgaaacggtaatttagtcacatgaccttttattttgcaacggaaacaaagttaagaaggagttaatgcctagtt 21346831  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 448521 - 448597
Alignment:
Q  114 catgtgttaattacttcctaattataaggaaactaccaagcttgcacacaagaagaagagaactcacggtcctttgtttt 193  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| ||||  | ||||||||||||||| ||||    
T  448521 catgtgttaattacttcctaattataagg-aaccaccaagcctgctcacaataaga--aaaactcacggtcctttatttt 448597  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 144
Target Start/End: Complemental strand, 31206945 - 31206915
Alignment:
Q  114 catgtgttaattacttcctaattataaggaa 144  Q
    |||||||||||||||||||||||||||||||    
T  31206945 catgtgttaattacttcctaattataaggaa 31206915  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 31210337 - 31210309
Alignment:
Q  113 tcatgtgttaattacttcctaattataag 141  Q
    |||||||||||||||||||||||||||||    
T  31210337 tcatgtgttaattacttcctaattataag 31210309  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 144
Target Start/End: Original strand, 32424792 - 32424822
Alignment:
Q  114 catgtgttaattacttcctaattataaggaa 144  Q
    |||||||||||||||||||||||||||||||    
T  32424792 catgtgttaattacttcctaattataaggaa 32424822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 1378 - 1346
Alignment:
Q  114 catgtgttaattacttcctaattataaggaaac 146  Q
    ||||||||||||||||||| |||||||||||||    
T  1378 catgtgttaattacttcctgattataaggaaac 1346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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