View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_low_18 (Length: 296)
Name: NF7799_low_18
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 115 - 282
Target Start/End: Complemental strand, 41275993 - 41275827
Alignment:
| Q |
115 |
atactacttccaagcccaacaaaactaacaactcaactcttgtaattgattggcttagcacatggaatgatggaaataagggatgcaattgtatgccaac |
214 |
Q |
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| T |
41275993 |
atactactcccaagcccaacaaaactaacaactcaactcttgtaattgattggcttagcacatggaatgatggaa-taagggatgcaattgtatgccaac |
41275895 |
T |
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| Q |
215 |
acaaacacaatcttatttctaatttgtagcatcttcttcaattattaatatttaatacccatgaaaat |
282 |
Q |
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| T |
41275894 |
acaaacacaatcttatttgtaatttgtagcatcttcttcaattattaatatttaatacccatgaaaat |
41275827 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 41276147 - 41276081
Alignment:
| Q |
57 |
cttcttgtggaaaacg---gaaaagaaagacaagaaagaatctaagacacttaagtgtgggatacta |
120 |
Q |
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| T |
41276147 |
cttcttgtggaaaacgacggaaaagaaagacaagaaagaatctaagacacttaaatgtgggatacta |
41276081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 41276228 - 41276195
Alignment:
| Q |
15 |
aagaaaatatattgaaaggagattgttaaatcca |
48 |
Q |
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| T |
41276228 |
aagaaaatatattgaaaggagattgttaaatcca |
41276195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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