View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_low_23 (Length: 246)
Name: NF7799_low_23
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_low_23 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 1421794 - 1421568
Alignment:
| Q |
20 |
caattttcacctccaatcccacacaactcgattactctcccattattccaacatccaacgatggcctcgttgcttcttgcgacggtctcctttgtttcgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1421794 |
caattttcacctccaatcccacacaactcgattactctcccattattccaacatccaacgatggcctcgttgcttcttgcgacggtctcctttgtttcgc |
1421695 |
T |
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| Q |
120 |
cattaatcaacgtctcgctgttctctataacccttgcattagaaaaataaagaaattaccctttattgatcttccacgagtacaaggttcaactgtatat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1421694 |
cattaatcaacgtctcgctgttctctataacccttgcattagaaaaataaagaaattaccctttattgatcttccacgagtacaaggttcaactgtatat |
1421595 |
T |
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| Q |
220 |
gcttttggatatgatcctttcattgat |
246 |
Q |
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||||||||||||||||||||||||||| |
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| T |
1421594 |
gcttttggatatgatcctttcattgat |
1421568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 24234006 - 24233815
Alignment:
| Q |
22 |
attttcacctccaatcccacacaactcgattactctcccattattccaacatccaacgatggcctcgttgcttcttgcgacggtctcctttgtttcgcca |
121 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||| || ||| | ||||||||| ||||||| |||||||||||||||||||| | || |
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| T |
24234006 |
attttcacttctaatcccacacaactcgattactctcccattattacatcatggcaggatggcctcattgcttcatgcgacggtctcctttgttttgtca |
24233907 |
T |
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| Q |
122 |
ttaatcaacgtctcgctgttctctataacccttgcattagaaaaataaagaaattaccctttattgatcttccacgagtacaaggttcaact |
213 |
Q |
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| T |
24233906 |
tcgatcaacgcctcgctgttctctataacccttgcattagaaaagtaaagaaattaccctctttagatcttccaagagaagaaggttcaact |
24233815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 181
Target Start/End: Complemental strand, 24222600 - 24222441
Alignment:
| Q |
22 |
attttcacctccaatcccacacaactcgattactctcccattattccaacatccaacgatggcctcgttgcttcttgcgacggtctcctttgtttcgcca |
121 |
Q |
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| T |
24222600 |
attttcaccactaatcccacacaacttgattactctctcattaatccaaaatatcctgatcacctcattgcttcttgtgactgactcctttgttttgcta |
24222501 |
T |
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| Q |
122 |
ttaatcaacgtctcgctgttctctataacccttgcattagaaaaataaagaaattaccct |
181 |
Q |
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| T |
24222500 |
ttaataaaagtctcgctcttctttggaaccctaccattagaaaattcaaggaattaccct |
24222441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 24512543 - 24512636
Alignment:
| Q |
88 |
gttgcttcttgcgacggtctcctttgtttcgccattaatcaacgtctcgctgttctctataacccttgcattagaaaaataaagaaattaccct |
181 |
Q |
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| T |
24512543 |
gttgcttcttgtgacggtctcctttgtatgtctattaacaaccgtcatgcagttctctataacccttccattagaaaattaaagaagttaccct |
24512636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 24635367 - 24635274
Alignment:
| Q |
88 |
gttgcttcttgcgacggtctcctttgtttcgccattaatcaacgtctcgctgttctctataacccttgcattagaaaaataaagaaattaccct |
181 |
Q |
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||||||||||||||||||||||||| | | || ||||| | | ||| || ||||| |||||||||| ||| |||||| ||||||| ||||||| |
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| T |
24635367 |
gttgcttcttgcgacggtctcctttctatagctattaacaaccatcttgcggttctttataacccttccatcagaaaattaaagaagttaccct |
24635274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 25478023 - 25478064
Alignment:
| Q |
22 |
attttcacctccaatcccacacaactcgattactctcccatt |
63 |
Q |
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| T |
25478023 |
attttcacctctaatcccacacaactcgattactctctcatt |
25478064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 25611560 - 25611520
Alignment:
| Q |
85 |
ctcgttgcttcttgcgacggtctcctttgtttcgccattaa |
125 |
Q |
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| T |
25611560 |
ctcgttgcttcttgtgacggtctcctttgtttcgctattaa |
25611520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 41000 - 40776
Alignment:
| Q |
22 |
attttcacctccaatcccacacaactcgattactctcccattattccaacatccaacgatggcctcgttgcttcttgcgacggtctcctttgtttcgcca |
121 |
Q |
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||||| ||||| ||||||||||| ||||||| ||||||||||||| || ||| | ||||| ||| ||||||| |||||||||||||||||||| | || |
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| T |
41000 |
atttttacctctaatcccacacagctcgattcctctcccattattacatcatggagggatggtctcattgcttcatgcgacggtctcctttgttttgtca |
40901 |
T |
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| Q |
122 |
ttaatcaacgtctcgctgttctctataacccttgcattagaaaaataaagaaattaccctttattgatcttccacgagtacaaggttcaactgtatatgc |
221 |
Q |
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|| |||| |||||||||||||||||||||||||||||||||||| |||||||| |||| | | | ||||||||| ||| | ||||||||| | ||| ||| |
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| T |
40900 |
ttgatcatcgtctcgctgttctctataacccttgcattagaaaagtaaagaaactaccttctttagatcttccaagagaagaaggttcaaatctatttgc |
40801 |
T |
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| Q |
222 |
ttttggatatgatcctttcattgat |
246 |
Q |
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||||| |||||||||||||||||| |
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| T |
40800 |
atttggctatgatcctttcattgat |
40776 |
T |
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