View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7799_low_24 (Length: 236)

Name: NF7799_low_24
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7799_low_24
NF7799_low_24
[»] chr5 (4 HSPs)
chr5 (18-104)||(20029408-20029494)
chr5 (103-218)||(20030283-20030397)
chr5 (106-192)||(17941132-17941217)
chr5 (106-192)||(32666422-32666507)
[»] scaffold0089 (2 HSPs)
scaffold0089 (18-104)||(34593-34679)
scaffold0089 (103-218)||(35561-35675)
[»] chr6 (2 HSPs)
chr6 (18-104)||(20513610-20513696)
chr6 (103-192)||(20514580-20514668)
[»] chr3 (1 HSPs)
chr3 (18-104)||(52615291-52615377)
[»] chr8 (1 HSPs)
chr8 (18-103)||(23172533-23172618)


Alignment Details
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 20029408 - 20029494
Alignment:
Q  18 ataataaggttatttcaggaagtcatgaatttcaatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccac 104  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20029408 ataataaggttatttcacgaagtcatgaatttcaatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccac 20029494  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 20030283 - 20030397
Alignment:
Q  103 acaatgggtcagtaggtgttgttttttagcgcaggggttgtggnnnnnnngagggctgggcggaggctgcttacaatgggttggaactaannnnnnnngt 202  Q
    ||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||| ||||||||||||| ||||||||        ||    
T  20030283 acaatgggtcagtaggtgttgttttttagcgcatgggttgtgg-tttgttgagggctgggcggaggcagcttacaatgggtcggaactaattttttttgt 20030381  T
Q  203 ttatgttttggcgcgg 218  Q
    ||||||||||||||||    
T  20030382 ttatgttttggcgcgg 20030397  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 17941217 - 17941132
Alignment:
Q  106 atgggtcagtaggtgttgttttttagcgcaggggttgtggnnnnnnngagggctgggcggaggctgcttacaatgggttggaactaa 192  Q
    |||||||||||||||||||||||||||||  || ||||||       ||||||||||||||||| |||||| |||||||||||||||    
T  17941217 atgggtcagtaggtgttgttttttagcgcctggtttgtggtttgtt-gagggctgggcggaggcagcttacgatgggttggaactaa 17941132  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 32666422 - 32666507
Alignment:
Q  106 atgggtcagtaggtgttgttttttagcgcaggggttgtggnnnnnnngagggctgggcggaggctgcttacaatgggttggaactaa 192  Q
    |||||||||||||||||||||||||||||  || ||||||       ||||||||||||||||| |||||| |||||||||||||||    
T  32666422 atgggtcagtaggtgttgttttttagcgcctggtttgtggtttgtt-gagggctgggcggaggcagcttacgatgggttggaactaa 32666507  T

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Target: scaffold0089 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 34593 - 34679
Alignment:
Q  18 ataataaggttatttcaggaagtcatgaatttcaatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccac 104  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34593 ataataaggttatttcacgaagtcatgaatttcaatttgacttgatatgatttgttttaatggaatttagtttagtgttttgtccac 34679  T

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Target: scaffold0089; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 35561 - 35675
Alignment:
Q  103 acaatgggtcagtaggtgttgttttttagcgcaggggttgtggnnnnnnngagggctgggcggaggctgcttacaatgggttggaactaannnnnnnngt 202  Q
    ||||||||||||||||||||||||||||||||  |||||||||       ||||||||||||||||| ||||||||||||||||||||||        ||    
T  35561 acaatgggtcagtaggtgttgttttttagcgcctgggttgtggtttgtt-gagggctgggcggaggcagcttacaatgggttggaactaattttttttgt 35659  T
Q  203 ttatgttttggcgcgg 218  Q
    ||||||||||||||||    
T  35660 ttatgttttggcgcgg 35675  T

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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 20513610 - 20513696
Alignment:
Q  18 ataataaggttatttcaggaagtcatgaatttcaatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccac 104  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20513610 ataataaggttatttcacgaagtcatgaatttcaatttgacttgatatgatttgttttaatggaatttagtttagtgttttgtccac 20513696  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 20514580 - 20514668
Alignment:
Q  103 acaatgggtcagtaggtgttgttttttagcgcaggggttgtggnnnnnnngagggctgggcggaggctgcttacaatgggttggaactaa 192  Q
    ||||||||||||||||||||||||||||||||  |||||||||       ||||||||||||||||| ||||||||||||||||||||||    
T  20514580 acaatgggtcagtaggtgttgttttttagcgcctgggttgtggtttgtt-gagggctgggcggaggcagcttacaatgggttggaactaa 20514668  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 52615291 - 52615377
Alignment:
Q  18 ataataaggttatttcaggaagtcatgaatttcaatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccac 104  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  52615291 ataatcaggttatttcacgaagtcatgaatttcaatttgacttgatatgatttattttaatggaaattagtttagtgttttgtccac 52615377  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 23172618 - 23172533
Alignment:
Q  18 ataataaggttatttcaggaagtcatgaatttcaatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtcca 103  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  23172618 ataatcaggttatttcacgaagtcatgaatttcaatttgacttgatatgatttattttaatggaaattagtttagtgttttgtcca 23172533  T

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