View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_low_4 (Length: 619)
Name: NF7799_low_4
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 312 - 601
Target Start/End: Complemental strand, 28211175 - 28210886
Alignment:
| Q |
312 |
aatcacgtggctcccacttctctctctacccataactatagaaaccaaacaatttctctgaacttcccgtaaatgcttatcggcgatggcatcgtctcaa |
411 |
Q |
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| T |
28211175 |
aatcaagtggctcccacttctctctctacccataagtatagaaaccaaacaatttctctgaacttcccgtaaatgcttatcggcgatggcatcgtctcaa |
28211076 |
T |
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| Q |
412 |
gaaaaacgacaccgttcaatcttcgaacttccatcaaactacttcgactcttgtcgttttctcccttctcctcattcttcacttcccgactacctaaccc |
511 |
Q |
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| T |
28211075 |
gaaaaacgacaccgttcaatcttcgaacttccatcaaactacttcgactcgtgtcgtcttcttccttctcctcactcttcacttcccgaccaccacaccc |
28210976 |
T |
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| Q |
512 |
aaacccttcaaccaccctcaaacgacgtcgtcgatgatactcaaaacgccgtcgtttcaggtcctagattgacctgcaatacttgcaagg |
601 |
Q |
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| T |
28210975 |
aaacccttcaaccaccctcaaacgacgccgttgatgatattcaaaacgccgtcgtttcgggtcctagattgacctgcaatacttgcaagg |
28210886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 485
Target Start/End: Complemental strand, 28246924 - 28246840
Alignment:
| Q |
401 |
catcgtctcaagaaaaacgacaccgttcaatcttcgaacttccatcaaactacttcgactcttgtcgttttctcccttctcctca |
485 |
Q |
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| T |
28246924 |
catcatctcaagaaaaacttcacaattcaatctttcaacttccaccaaacttcttcgactcttgtcattttctcccttctcctca |
28246840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 484
Target Start/End: Complemental strand, 28229866 - 28229779
Alignment:
| Q |
397 |
atggcatcgtctcaagaaaaacgacaccgttcaatcttcgaacttccatcaaactacttcgactcttgtcgttttctcccttctcctc |
484 |
Q |
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| T |
28229866 |
atggcatcatctcaaaaaaaacttcaccgttcaatctttcaacttccaccatacttcttcgaccattgtcgttttctcccttcccctc |
28229779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 601
Target Start/End: Complemental strand, 28229775 - 28229686
Alignment:
| Q |
509 |
cccaaacccttcaaccaccctcaaacgacgtcgtcgatgatactcaaaacgccgtcgtttcaggtcctagattgacctgcaatacttgcaagg |
601 |
Q |
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| T |
28229775 |
cccaaacccttcaaccaccttcaaaccacatcg---atcatattcaaaacgccgtcgtttcgggttctagcttaacatgcaatacttgtaagg |
28229686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 38505971 - 38506028
Alignment:
| Q |
78 |
ttctccatttctttcaaattctttttcgaaaa-gccaaaacatttcttccaatgattt |
134 |
Q |
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| T |
38505971 |
ttctccatttctttcaaattctttttcgaaaaggacaaaacatttctttcaatgattt |
38506028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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