View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_low_5 (Length: 571)
Name: NF7799_low_5
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 21875629 - 21875057
Alignment:
| Q |
1 |
tagagaacatagatagtacgttaagaatgggaatgatgagcttgatggttgcacttaacttgatgcaatctgatgcagataaaaatttggctcatgatca |
100 |
Q |
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| T |
21875629 |
tagagaacatagatagtacgttaagaatgggaatgatgagcttgatggttgcacttaacttgatgcaatctgatgcggataaaaatttggctcatgatca |
21875530 |
T |
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| Q |
101 |
tgcacaagttgtgcctatgacactctttgtagctgttctttgcctatgtttggtcattggtcatttgcttgaagaaagtcgatggattaatgaatccatt |
200 |
Q |
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| T |
21875529 |
tgcacaagttgtgcctatgacactctttgtagctgttctttgcttatgtttggtcattggtcatttgcttgaagaaagtcgatggattaatgaatccatt |
21875430 |
T |
|
| Q |
201 |
gtcgccatttttgttgtaagacacaaataacctttaatttctttttcaatcattcttgtttgtgttatttcatgcattgtgtg-nnnnnnnactcggtat |
299 |
Q |
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| T |
21875429 |
gtcgccatttttgttgtaagacacaaataacctttgattt-tatttcaatcattcttgtttgtgttatttcatgcattgtgtgttttttttacccggtat |
21875331 |
T |
|
| Q |
300 |
tcggtccaatgaccgattaatatgaggggttcaatctcatcattcacatggcctgtttaaaccctgagtaaagctatgcatgaactagtccacctaaatt |
399 |
Q |
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| T |
21875330 |
tcggtccaataaccgattaatatga-gggtccaatctcatcctgtttaaaccttctttaaaccctgagtaaagctatgcatgaactagtccacctaaatt |
21875232 |
T |
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| Q |
400 |
gagatcaaacctgacacatttagaggagcacacctacgttaaatgtttttaattagtaaaa-ggtaacctggtgcactaatgcacccgca--tgtgcaag |
496 |
Q |
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| T |
21875231 |
gagatcaaacctgacacattgagaggagcacacctacattaaatgtttttaattagtaaaagggtaacgtggtgcactaatgcacccgcatgtgtgcaag |
21875132 |
T |
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| Q |
497 |
gcctaagatggcgtcccactatctgatgtattgtacgcagccttatcctcnnnnnnnacacaagaggttgtttcc |
571 |
Q |
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| T |
21875131 |
gcctgagatggcgtaccattatttagtgtattgtacgcagccttaccctcttttttaacacaagaggttgtttcc |
21875057 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 541
Target Start/End: Complemental strand, 42476999 - 42476922
Alignment:
| Q |
464 |
aacctggtgcactaatgcacccgcatgtgcaaggcctaagatggcgtcccactatctgatgtattgtacgcagcctta |
541 |
Q |
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| T |
42476999 |
aacctggtgcactagagctcccgcatatgcagagcctaggaaggggtcccaccatttggtgtattgtacgcagcctta |
42476922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 10378747 - 10378819
Alignment:
| Q |
469 |
ggtgcactaatgcacccgcatgtgcaaggcctaagatggcgtcccactatctgatgtattgtacgcagcctta |
541 |
Q |
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| T |
10378747 |
ggtgcactaaagctcccgcatatgcagggtccaagaaggggtcccaccatttggtgtattgtacgcagcctta |
10378819 |
T |
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