View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7799_low_6 (Length: 546)
Name: NF7799_low_6
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_low_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 534
Target Start/End: Complemental strand, 17753048 - 17752522
Alignment:
| Q |
8 |
atgggagaacagcattcattatctcgaagctctttagcaacgcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctgattcag |
107 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17753048 |
atgggagaacaacattcatcatctcgaagctctttagcaacgcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctgattcag |
17752949 |
T |
|
| Q |
108 |
tttatcaaatcaagtaagatgagtgagaaagttggtaatgtagaataccttgagtgaataattcataaaagagcaactcatgctatattttaatccaatc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
17752948 |
tttatcaaatcaagtaagatgagtgagaaagttggtaatgtagaataccttgagtgaataattcataaaagagcaacacatgctatattttaatccaatc |
17752849 |
T |
|
| Q |
208 |
cacacattcaaatgcaaatttaagcgtatatacttcaaagtaaatcaaaagaaagaaagaaaaacgtgctgaccagaaagatatacactcactaatacta |
307 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17752848 |
cacacattcaaatgcaaatttaagcgtgtatgcttcaaagtaaatcaaaagaaagaaaaaaaaacgtgctgaccagaaagatatacactcactaatacta |
17752749 |
T |
|
| Q |
308 |
cctcctgaaatctaatcccacaaggaaaataaaaaagtatactcaaaaaggttttaaggtaaatacttgaaagcactgaatttttcgtttccaaatagat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17752748 |
cctcctgaaatctaatcccacaaggaaaataaaaaagtatactcaaaaaggttttaaggtaaatacttgaaagcactgaatttttcttttccaaatagat |
17752649 |
T |
|
| Q |
408 |
tacatgcaacacacatacatgttgaccgaactcatcgcaaaaggtttacgcagttgacaaaaatgaaataggcaaataataaaaagcataaatgtaaatg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
17752648 |
tacatgcaacacacatacatgttgaccgaactcatcgcaaaaggtttacgcagttgacaaaaatgaaataggcaaatgataaaaagcataaatgtaaatg |
17752549 |
T |
|
| Q |
508 |
ttacggttagcacacaattgatgtcca |
534 |
Q |
| |
|
|||| ||| |||||||||||| ||||| |
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|
| T |
17752548 |
ttacagtttgcacacaattgaagtcca |
17752522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 8 - 534
Target Start/End: Complemental strand, 17762035 - 17761509
Alignment:
| Q |
8 |
atgggagaacagcattcattatctcgaagctctttagcaacgcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctgattcag |
107 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17762035 |
atgggagaacaacattcatcatctcgaagctctttagcaacgcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctgattcag |
17761936 |
T |
|
| Q |
108 |
tttatcaaatcaagtaagatgagtgagaaagttggtaatgtagaataccttgagtgaataattcataaaagagcaactcatgctatattttaatccaatc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
17761935 |
tttatcaaatcaagtaagatgagtgagaaagttggtaatgtagaataccttgagtgaataattcataaaagagcaacacatgctatattttaatccaatc |
17761836 |
T |
|
| Q |
208 |
cacacattcaaatgcaaatttaagcgtatatacttcaaagtaaatcaaaagaaagaaagaaaaacgtgctgaccagaaagatatacactcactaatacta |
307 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17761835 |
cacacattcaaatgcaaatttaagcgtgtatgcttcaaagtaaatcaaaagaaagaaaaaaaaacgtgctgaccagaaagatatacactcactaatacta |
17761736 |
T |
|
| Q |
308 |
cctcctgaaatctaatcccacaaggaaaataaaaaagtatactcaaaaaggttttaaggtaaatacttgaaagcactgaatttttcgtttccaaatagat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17761735 |
cctcctgaaatctaatcccacaaggaaaataaaaaagtatactcaaaaaggttttaaggtaaatacttgaaagcactgaatttttcttttccaaatagat |
17761636 |
T |
|
| Q |
408 |
tacatgcaacacacatacatgttgaccgaactcatcgcaaaaggtttacgcagttgacaaaaatgaaataggcaaataataaaaagcataaatgtaaatg |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17761635 |
tacatgcaacacacatacatgttgaccgaactcatcgcaaaaggtttacgcagttgacaaaaatgaaataggcaaatgataaaaagcataaatgtaaatg |
17761536 |
T |
|
| Q |
508 |
ttacggttagcacacaattgatgtcca |
534 |
Q |
| |
|
|||| ||| |||||||||||| ||||| |
|
|
| T |
17761535 |
ttacagtttgcacacaattgaagtcca |
17761509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 493
Target Start/End: Complemental strand, 17738901 - 17738420
Alignment:
| Q |
7 |
gatgggagaacagcattcattatctcgaagctctttagcaacgcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctgattca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
17738901 |
gatgggagaacagcattcattatctcgaagctctttagcaacgcccctgacttcaaaatcccaaataacacagcttccatcattgcagccagctgattaa |
17738802 |
T |
|
| Q |
107 |
gtttatcaaatcaagtaagatgagtgagaaagttggtaatgtagaataccttgagtgaataattcataaaagagcaactcatgctatattttaatccaat |
206 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
17738801 |
atttatcaaatcaagtaacatgagtgagaatgttggtaatgtagaataccttgagtgaataattcataaaagagcaacacatgctatattttaatccaat |
17738702 |
T |
|
| Q |
207 |
ccacacattcaaatgcaaatttaagcgtatatacttcaaagtaaatcaaaagaaagaaagaaaaacgtgctgaccagaaagatatacactcactaatact |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| | || || ||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
17738701 |
ccacacattcaaatgcaaatttaagcatatatgcttcaaagt--agggaagga---aaaaaaaaacgcgttgaccagaaagatatacactcactaatact |
17738607 |
T |
|
| Q |
307 |
acctcctgaaatctaatcccacaaggaaaataaa-aaagtatactcaaaaaggttttaaggtaaatacttgaaagcactgaatttttcgtttccaaatag |
405 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| |||| ||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
17738606 |
acctcctgaaatctaatcccactaggaaaataaataaagtatactc-aaaactttttacggtatatacttgaacgcactgaatttttcttttccagatag |
17738508 |
T |
|
| Q |
406 |
attacatgcaacacacatacatgttgaccgaactcatcgcaaaaggtttacgcagttgacaaaaatgaaataggcaaataataaaaag |
493 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||||||||||||| | |||||||| ||| ||||||||||||| | |||||| |
|
|
| T |
17738507 |
attacatgcaacacacatacgtgctgaccaaactcatcgcaaaaggtttaggaagttgacataaaagaaataggcaaatgacaaaaag |
17738420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 15735006 - 15734781
Alignment:
| Q |
7 |
gatgggagaacagcattcattatctcgaagctctttagcaacgcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctgattca |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
15735006 |
gatgggagaagagcattcattatctcgaagctctttagcaatgcccctggtttcaaaatcccagataacacagcttccatcattgcagccagctgattca |
15734907 |
T |
|
| Q |
107 |
gtttatcaaatcaagtaagatgagtgagaaagttggtaatgtagaataccttgagtgaataattcataaaagagcaactca---tgctatatttt-aatc |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
15734906 |
atttatcaaatcaagtaacatgagtgagaaagttggtaatgtagaata-tttgaataaataattcataaaagagcaacacatgctgctatattttaaatc |
15734808 |
T |
|
| Q |
203 |
caatccacacattcaaatgcaaattta |
229 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
15734807 |
caatccacgcattcaaatgcaaattta |
15734781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 29516562 - 29516656
Alignment:
| Q |
8 |
atgggagaacagcattcattatctcgaagctctttagcaacgcccctgacttcaaaatcccaaatgacacagcttccatcattgcagccagctga |
102 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||||| || || || |||||||||||| | |||||||| |
|
|
| T |
29516562 |
atgggagaagaacattcattatctcgaagctctttagcaatgcccctggtttcaaaatcccagataacgcaacttccatcattggacccagctga |
29516656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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